HsaINT0161397 @ hg38
Intron Retention
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127660030-127661205:+
Coord C1 exon
chr9:127660030-127660108
Coord A exon
chr9:127660109-127661101
Coord C2 exon
chr9:127661102-127661205
Length
993 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GTCTTTTGTCATACTTGCAGCTT
3' ss Score
8.63
Exon sequences
Seq C1 exon
TCCGTCCACTCTCTCATCAGTGACTTTAAGGACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTCTTCACTGACT
Seq A exon
GTGAGTACAACCAAGAGCTGTCCCCAGTCCCATCAGGCAGGTTAGCATTTCTGTACAGCTGGGCTGAGCCAAAACTAAGGCAGGTCAAGAGGGAAGAAATGGGTTGTTACCATGCTTGTCCCGATCTGCTGGTTTCTCTTCAGAAGATAAATTGCATAAGAGACAAAAATAAGTGCACGCAAATACAAACCCACTAGATCATGCAGTCCTTCCTGCTGAAAAATAGCACACAAGCACCTCTTCTCAGGACTGACAGGCTTGGTGCTGAGAATGACCTTCCTGAGGCTTGGCATTTCATTATGTAGACTTCCAGTTAGCACTGTATGCTGTAGTATGTTTCCATCAATTTTTCAACTACAAAGATATTCCAATCCAGTAGTCTTTGTATTAGATAGAATCTGCATCATTACCCTAGAATTAGTTTTCTTATGTTTTGAGGATTTTATGCTCAGATCCTAGCGGAGAAGCAGAGGGAGATGAATTGACCTGGACAGCTACAGAGTATAAAACAGTAAGAATTCACCCAGAGATCTTCTCTCTAGGGATAAACTCCCACAGCACTCACCACTGAGAAAGTGGAAAGGATATAGCAGAAGAAGGATTTTGGCCGGGTGTGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCTAGGCGGGTGGATCACCTGAGATCAGAAGTTCGAGACCAGCCTGGTCAACATGGTGAAACCCCATCTCTACAAAAATACAAAAATTAGCTGGATATGACAGCAGGTGCCTATAATCCCAGCTACTCGGGAGGCTGAGGTGGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCAAGATCACGCCATTGCACTCCAGTCTGGGTGACAGAATGAGACTCCATCCAAAAAAAAAAAAAAATCCTGATAAAATGAAGAGCCCACTGTACATGTGCAGCTGTTAAATGAACCAGCAAATGGACAGGAAAGCCAACTGTCTTTTGTCATACTTGCAG
Seq C2 exon
CTTGTCCAGATGCCCTGTTTAATGAACTGGTAAAATCCCGAGCAGCCAAAGTCATCAAAACTCTGACGGAAATCAATATTGCATTTCTCCCGTATGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854:ENST00000373302:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(19.1=100)
A:
NA
C2:
PF0099518=Sec1=PD(28.0=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCCACTCTCTCATCAGT
R:
TGGGATTCATACGGGAGAAATGC
Band lengths:
182-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains