HsaINT0161424 @ hg19
Intron Retention
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:11446]
Coordinates
chr1:109337449-109338994:+
Coord C1 exon
chr1:109337449-109337529
Coord A exon
chr1:109337530-109338855
Coord C2 exon
chr1:109338856-109338994
Length
1326 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AATATTTTATTTTCATTAAGGAC
3' ss Score
5.74
Exon sequences
Seq C1 exon
CAAGTTGTCCATCTTAACTTAGCAGAAGATTGCATGAATAAGTTCAAGCTTAATATAGAAAAGCTCTGCAAAACTGAACAG
Seq A exon
GTATGTGCAGAGTCAGAAATGCCTCTGTTCATAACAAATTTCAAGGATAAACTTTGTAAGTTAAAACCTAACTTTTTGCTTGATACAGTGGTTGGTTTTTACAGAATCACAGACTCTCTCTTATCAGGGGAGCCACCTAGGCAGTATTTAATGTCATTCCCCGCTAACATTAACAAGTAGCTGTAGAGTATCTTAGTAAACAGTCCCTCCTAATATATTATATATTTTTTGTTTAATGGAATGATTTAAATTTTGGGAGCATGATTTCAGGGTGGCATTATTGGCAGGACCTTCTCAGTACGGGATTTAATATAGCATCCAGCAGAGCTCATTTTACAAGGGGCCTTTTATATCATGCCTCAACTGTTTAGACCATTGCCCCTCATAGAATACAAGCTGCATGTAATTTTAATTATTCTAATAGCCATGTTAATGCAGGTAAAAATTAAAAAGTGCAATTAATTTTACGAATAAGTTGGGTGCAGTGGTGTGTGCTTATAGTCCCAGCTATTCAGGAGGCTGAGGTGGGAGGATTGCTTGATCCCAGGAGTTTGAGGGCAGCCTGGGCAAGACCCTGTCTCTTTAAAAAAAAAAAAGAAAAAAAAAACTTTGACAACCTGATGTATTCAAAATATTATTTCAACATATAATCAGTATAAAAAGTTATTAATTAGATAATTTTGCATTGTATTACTTCAAGTCTCCTGGTGTTTTGTACCTACAGCACATCTTAATTCAGACTGATCCCATTTCAAGTGTTCAGTAGTCATATGTGGCTAGTGGCCACAGTACTGGATAGCATAGGTTTAGATTAATGATTTTTATCTTCTCTGATTTATTTTTTGACCTTTTGTATTTTGTATAAACAATAGTTTACAAGTGATGTTCATATTTTCTTGTGTAATGTCATCAGTGTTCCATTAAAATTTGACAAGATTTAATAATAGATTTTGTGTGTTTGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTAGAGTGCAATGGCCCAATCATGGCTCACTGCAACCTCTGCCCACCGGGTTCAAGTGAGTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCACCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTACAGATGGGGTTTTACCATGTTGGCCAGGCTAGTCTCCAACTCCTGACCTCAGGTGATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTACCCAGCCAATAATAGATGTTTTTAACTAAAAAATGAATTTTGGTTATAGATCACTGACAATATTTTATTTTCATTAAG
Seq C2 exon
GACCTGGCACTTGGAACTGATGCAGAAGGACAGAAGGTGAAAGATTCCATGCGAGTACTCCTTCCAGTTCTACTCAACAAAAATCATGATAATTGTGATAAAATAAGAGCAATTCTACTTTATATCTTCAGTATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266-STXBP3:NM_007269:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100)
A:
NA
C2:
PF0099518=Sec1=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)