HsaINT0162001 @ hg19
Intron Retention
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:11475]
Coordinates
chr9:136224587-136227005:+
Coord C1 exon
chr9:136224587-136224690
Coord A exon
chr9:136224691-136226825
Coord C2 exon
chr9:136226826-136227005
Length
2135 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CGTGCTGGCTTATCTCCCAGATG
3' ss Score
9.15
Exon sequences
Seq C1 exon
GCACCAGTTGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGCGGTACCAGCGAGCTCTGTGTAAAT
Seq A exon
GTAAGTCCCAGTGGACCCCCATCAGTGCATCGCCATCTGAGTGCATGCCCGCCTTGCCCCAGATGGAGCGTGCTTGAAGGCAGGTCGTCCTTCAGCGATCCGTGTTGATGCATCAGGCCTGTTTTTTGGCACAGTGAAGAGAGGGATGATGGCCCCTGACCCCACAGCTTTTAGTGCAGGCAGGCACAGAGCCAGAAGCAGGCTCGGGAGTGAGTGAGTGTGCGTGGCAATGCGAGGTGTGAAAGAAACTGGGCGAGGGATGTGGGGTGGGCTTGCGGAGACAGGAGGGCTGGGGAGACTCGCTGAGGGATTCGCTCGAGGCTGAGGCTGGAGGGATGTGGTGGCAGTGGGGTCGGGGGAACAGCACCCCAGGGAGAAGCCAGGGTCCATGGAAGTCTGAGGCAAAAATGTGTTGGCTGAGGTAGGCTCCAAAGGACTGGCTGGGCTAGTGTGCACAGCCCGGATGACCCAGAGACCAGGCCAGGAGCACTGCAGTGGGTGTGTGGAGAGGGTTGGGTGGGGGCTGCATGGACAGTGTGCATGGTTGAGAAGGGAGGACTCCTTGACTGCGGTCATCCAGGAAAAGACGGTGGGTTTTGGGGGGAGAATTCAGAGTCCCTTTGAAGGTTTTAAGCTTGAGCTGTATTAGGAAAGGTGTGTATTAGGGAAGTATCGGGCTTTTGAAACAGGGACACCCGTGCTGGATGAAGGAGATGGTTGCACCGTGGATCTGGGTGAGCACCCGGCGAGAGTTTAGAGAAGGGAGAGAGGCCTGGTCCTGAGCCCCAGGAAGAGGCTGGAAGTCCTCCCGTGGTACTGAAGGGAAGATGAGGACAGAAAAATGATAGATTTGATAACACAGAGGCCCCTGGCAACCTTGGTGAGGCACCTGAAGCTTGGCAGGGACACCTGGCTAGAGTGGAGCGTAGGCTGCAGCCCATGAGGGCAGTGTCCGGCCTTAGGCAGGTGCTGGGTCACCAGAAAGCCTTTCTGGAGTCCAGCTAAGGAGGGAAATGGACAGAGGCTGGAGCGGACAGATTCAGGTTGGTTTGCGGATGGGAAGATGCGTCTACGGGCTTCTGATGAGTGCGGAGAGGCAGTCCAGCCCTCCCGAAGCATGAGTGTGGATTGAGAAGGCAGGACCAGGGTTTCTCAAGTAGAAGGCGGGCACCTTGCAGAGGCCTTGCAGGCACAAGGGCTGCCAGCCTGAGGCTTGGACTTTTTCCAGCCAGTGTGTTAGCTGCTCAGGGGTGGGCAGGAAGGCTCTAAGTGCAGGGGGCCACGGGGTTCCCATGAAGAATGGTTATGATGGTGGACTGTGGAGCTGAGATGGGACTGGGGCGCCGAGGTCACTGCAAGGCAGTGGTCCAGGGAAGTCCAAACGTGGCTGTAAGGGGGCTCTGCCTTCACGTTCTGGTGGTGACAAGGCTGCTGCATGGCCATGGGGGTGGGTGGCAGAGACAAGGAGGGAAACAGCCCTGGAGATGGGCCGCCACATCAATGGCCAGGGCCCAGCAGGGCTCATGCAGCCCATGAGGGATGATGATGGTAGCTGCGCTGGGCTGGAGGGCAAGCCCCAGCAGACCCTCCAATATACAAGGGGACAACGGTGGTGACTCCAGTGAGGTCTTTCCATGGAAGCCTTGTCCCAACTCCCTTCTCACCCACTAAGGGGCAGCAAAGGCCAGGCAGCCAACCTCCACTGAGCCCCGCCCTCCGGGACGGGGTCTCCCATGTGCTGAGGGAGGACTTCAGGCTGCTGGGGAGAGGGTGGCATCACTGCCAGCCCGAGTTGCCTTTGAGAGGCCATGCCAAGCTCACTGGGGCACAGTTGGCCTTGGGCCTGGTCAGTGCCCTCCTAGCCGTGGCTTCCTAGGCCTGGCTAGATCGGGGATGAGTGGTAAAGGCCCCGTAGACCTCTACCATCTTCTTGCCTCCTGGCTGCAGCCCTGGCCCACCACCCTCCCTGCACACCTGGTAGGAACAGAGCTGAGGCACCCAGCAGCTGCTCTGGTTTTTGTCCAGGGCGGTGGGGCTGTGGGGCCCTGGCCGAGTGCAGTCCTCATAAGTTAGCTGTGGCCCAGAGGACCGTGGGGGGTGTGGAGGTACCCAGCACGTGCTGGCTTATCTCCCAG
Seq C2 exon
ATGAAGAATGTCAGAAGCAAGGGGTGGAGTACGTGCCTGCCTGCCTGGTGCACCGGAGGAGGAGGAGGGAGGACCAGATGGACGGTGACGGGCCTCGCCCGCGGGAAGCCTTCTGGGAGCCCACATCCAGTGATGAGGGGGGAGCTGCAAGTGATGACAGCATGACAGACCTGTACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291-SURF2:NM_017503:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.656
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.8=100)
A:
NA
C2:
PF054776=SURF2=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)