HsaINT0162002 @ hg38
Intron Retention
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:HGNC:11475]
Coordinates
chr9:133359950-133360434:+
Coord C1 exon
chr9:133359950-133360129
Coord A exon
chr9:133360130-133360264
Coord C2 exon
chr9:133360265-133360434
Length
135 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGC
5' ss Score
6.58
3' ss Seq
AATCCCTGTGTTCCTCCCAGCTG
3' ss Score
7.97
Exon sequences
Seq C1 exon
ATGAAGAATGTCAGAAGCAAGGGGTGGAGTACGTGCCTGCCTGCCTGGTGCACCGGAGGAGGAGGAGGGAGGACCAGATGGACGGTGACGGGCCTCGCCCGCGGGAAGCCTTCTGGGAGCCCACATCCAGTGATGAGGGGGGAGCTGCAAGTGATGACAGCATGACAGACCTGTACCCAC
Seq A exon
GTAAGCAGAACAGGCCCTGCTTCTCCCTGACCCTCTACTGTCAGCAGGGAGCAGACTGTGGTGCTGCCTCCCCTGCAAAGGTGGCAGCGAACTCAGCCTAAAATAACTGTCAGCCAATCCCTGTGTTCCTCCCAG
Seq C2 exon
CTGAGCTATTCACCAGAAAGGACCTTGGAAGCACGGAGGATGGGGATGGCACTGATGACTTTTTGACAGACAAAGAGGATGAGAAGGCAAAGCCCCCAAGAGAGAAGGCCACTGATGAGGGCAGGAGAGAGACGACCGTGTACCGAGGGCTGGTCCAGAAGCGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291:ENST00000371964:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.982
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(23.7=100)
A:
NA
C2:
PF054776=SURF2=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGGAGGACCAGAT
R:
TCTCTCCTGCCCTCATCAGTG
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains