HsaINT0162030 @ hg19
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24582225-24583418:+
Coord C1 exon
chr22:24582225-24582383
Coord A exon
chr22:24582384-24583169
Coord C2 exon
chr22:24583170-24583418
Length
786 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGCATCCCCCTTGAGCCCAGGAA
3' ss Score
0.9
Exon sequences
Seq C1 exon
GCACGGAGACCCGTGGCACTGGGCTGACCGCAGTGGCCGTCCAGGAGGGCAACTCAGATGTGGTGGAAGTCAGGCTGGCCAACAGGACCGGAGGTCTGGAGGTGCTGCTGAACCAGGAGGTGCTGAGCTTCACCGAGCAGAGCTGGATGGACCTGAAAG
Seq A exon
GTGAGCAGTCCAGCCACGCGAGGCTGCGGGCTGCCCTCACCTCCTCCCCATTCCTGCAGGGAGACTGAGGGGAAGCCCTGGGCCTTCATGCCTCTCCCAGTCCTGGCTAGAGGCCTGGGTGGTCCGACCTCAGGCCTTCACACCCACCGAGGTGCCCCCGTCGTACCCACCTGGTCAAAAGCCGAGAGGCCGTGACGGTGGGACATGTCCTCCCTACGGAGGATCCCGGGAGCCTTCTGGAGGGGAACTCACCCTGGTAACGTTCACCGCTGGCCTGCACAGAGCCACTCCTGTGCTCCTGTCACTCCCTCAGTCCTCAAAAGCCACTGCAAGGTCTCCAGCCCTGCACGGTTAAGGATGCCCCTGGCAAGTGGTAGCTCCACATCTGAACCCCTTGCCTCAGGGAACTGAGTCAATGAAAGGATTCCTGGTTGGGATGGGTGAGGACCTGGGAGGGGCCTGTCAGCACTGAGGGTTCAGGGACCCTCGGGACGTGCCCAGGCAGGTGTGGCTGCTGCAGCCAAGGCCAGAGGGACCCACACGTGCATCTCAACATGGGGGATTCACTGCAGGGGCTGCACCTCAGGTGCCGCTGGGAGTTCCACCGCAAGCATGGCAGGGGTGGCGGAGGGTCATGGTCAGCAGAATTGGCCCCGGGAACGCCCTCCCTTCCCCTGCAGGTGCCCTCACCCACAGCCCCTGGGTGCCGACCACCCTGTCCTGGGGCTGCGGGAGGGGACAAGATGCTCACAGCGGGTGACCCTAATGCATCCCCCTTGAGCCCAG
Seq C2 exon
GAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCCATCATGCTGGCATCAGGGGCCGGCCTGGAGGTCAGCGTGCAGGGCCCGTTCCTGAGTGTGTCCGTCCTGCTGCCTGAGAAGTTCCTCACCCACACCCACGGCCTCCTCGGGACACTCAACAACGACCCCACCGACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGGCACCAGTCCCCAGGAGCTGTTCCTGTTTGGGGCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-SUSD2:NM_019601:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(31.7=100)
A:
NA
C2:
PF0009420=VWD=PD(38.9=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGTGGAAGTCAGGCTG
R:
GTTGGCCCCAAACAGGAACAG
Band lengths:
351-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)