HsaINT0162035 @ hg19
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24579025-24579614:+
Coord C1 exon
chr22:24579025-24579235
Coord A exon
chr22:24579236-24579462
Coord C2 exon
chr22:24579463-24579614
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
CACCACCACCACGCCCACAGGTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
ATGCCCAAGAGAGCTGCTCCATGCGCTGTGGCGCCCTGGACGGGCCATGTTCCTGCCACCCGACGTGCTCTGGCCTTGGCACCTGCTGCTTGGATTTCCGGGACTTCTGCCTGGAGATATTGCCCTACTCAGGATCCATGATGGGCGGCAAGGACTTTGTGGTGCGGCACTTCAAGATGTCCAGCCCCACAGACGCCAGTGTGATCTGCAG
Seq A exon
GTTGGGAGGCCCAGGAGGCCGGGCACTGGGGCCCCACGCCCCCATCCCTGTGCATGCTGAGGGCTCAGACCCACTGACTGGCTGAGTGGAGCCCCTCGGACCCAGGACAGGCAGGAGGGCACAGGGACAGCTGGCTGGTTGGGTTCCCCAGGGAGGTTGGGGGCCCAGACCATCGAGAGGCTCAGCCTGCAATGACCCAGCCCCTCCCACCACCACCACGCCCACAG
Seq C2 exon
GTTTAAGGACAGCATCCAGACCCTCGGCCATGTGGACTCCTCCGGGCAAGTGCACTGTGTGTCACCTCTGCTCTATGAGAGCGGCCGCATCCCCTTCACTGTGTCACTGGACAACGGCCACTCCTTCCCTCGTGCGGGCACCTGGCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-SUSD2:NM_019601:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=WD(100=56.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGAGCTGCTCCATGC
R:
GATGCGGCCGCTCTCATAGA
Band lengths:
298-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)