HsaINT0162037 @ hg19
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24580104-24580908:+
Coord C1 exon
chr22:24580104-24580271
Coord A exon
chr22:24580272-24580733
Coord C2 exon
chr22:24580734-24580908
Length
462 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCAGGCATCCTCTCCCTCAGGAA
3' ss Score
6.72
Exon sequences
Seq C1 exon
TGCACCCCAACAAAGTGTCAATGATGGAGAAGAGCGAGTTGGTGAACGAGACGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGCAACCTCAGCCTGACCTGGCATGTCAAGTCGCTGCCCACGCAGACCATCACCATCGAACTGTGGGGCTACGAGGAGACAG
Seq A exon
GTGAGGCCAGCTGAGGGCTGGGGTGGCATCAGAGCTTTGGGCCCCCAGAGGGGGAGAAAGGGGGTCCCAGCTGTGTGGGAGGAGGAAGGGAGTTTCCAGGTGGGGTTGAGGAGGGAAGGGAATTCCAGGCAGAGATTGAGGATTCGGATGGAGGGAAGTGCAGGTCAGGGGGGTCAGGCAGGTGGGAGGGGGCAGCTCATGGGGCCTGGCTCCAGGGGAGGAGGCTCATGAGGAACCCCTGCACGGCTGGCATGGCCCTGGGCCCAGCTTCCAGCAGGGACAGGGATCCTGGAGTGTGGCAGGAGGTGATGGTCACCCAAGCCGGGGTCCCTGCTAGAACAGCCCCTCCTAAGGGGACCGCCTGGCGGTCCATCCACCCATCTGTCAGGCTGCTGTAGGTGGCAAGGCCTGGGGCCAGGCCTCGAAGGAACCCCAGGGCTAACCAGGCATCCTCTCCCTCAG
Seq C2 exon
GAATGCCCTACTCACAGGAGTGGACTGCAAAGTGGTCGTACCTGTACCCCCTGGCCACACACATCCCCAACTCCGGCTCTTTCACTTTCACCCCAAAACCTGCTCCTCCCAGCTACCAGAGATGGCGAGTGGGTGCACTTCGGATCATCGACAGCAAAAATTACGCAGGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-SUSD2:NM_019601:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCCCAACAAAGTGTCAA
R:
TCTGCCCTGCGTAATTTTTGC
Band lengths:
342-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)