HsaINT0162040 @ hg38
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr22:24185486-24185929:+
Coord C1 exon
chr22:24185486-24185571
Coord A exon
chr22:24185572-24185660
Coord C2 exon
chr22:24185661-24185929
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACTCACTGGCTCCTGCAGCCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ACGGACTACGGCTGTGACATGGAGCAGGGCAGCGTGTGCACCTACCACCCCGGGGCCGTGCACTGTGTGCGTTCTGTGCAGGCCAG
Seq A exon
GTGAGCCCCCAGGCTGGGGCCGGTATGGGGATTGGGGTCAGGGGTGGGCTCCCAACAGTGGCCTGGCCCTGACTCACTGGCTCCTGCAG
Seq C2 exon
CCTCCGGTACGGCTCAGGTCAGCAGTGCTGCTACACAGCGGACGGGACGCAGCTCCTGACAGCTGACTCCAGCGGCGGCAGCACTCCCGACCGCGGCCATGACTGGGGCGCACCCCCGTTCCGCACGCCACCCCGAGTGCCCAGCATGTCCCACTGGCTCTACGATGTCCTCAGCTTCTATTACTGCTGCCTCTGGGCACCCGACTGCCCCCGCTACATGCAACGGCGGCCCTCCAATGACTGCCGCAACTACCGGCCCCCAAGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994:ENST00000358321:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.253
Domain overlap (PFAM):
C1:
PF0378212=AMOP=FE(19.2=100)
A:
NA
C2:
PF0378212=AMOP=PD(52.1=83.5),PF0009420=VWD=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGTTCTGTGCAGGC
R:
TAGAGCCAGTGGGACATGCTG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains