HsaINT0162042 @ hg38
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr22:24186016-24186415:+
Coord C1 exon
chr22:24186016-24186159
Coord A exon
chr22:24186160-24186256
Coord C2 exon
chr22:24186257-24186415
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTCTGCTCCCACCACCGCAGGCA
3' ss Score
8.37
Exon sequences
Seq C1 exon
CCTCCGCCTTCGGAGACCCACACTTTGTGACCTTCGACGGCACCAACTTCACATTCAATGGGCGCGGAGAGTACGTGCTGCTGGAGGCAGCGCTGACCGACCTGAGGGTGCAGGCGCGGGCCCAGCCCGGGACGATGTCCAACG
Seq A exon
GTGAGGCCAGGGCTAGGGGCTGCTCTGGTTGGCATGGGGTAGAACCAAGGTGGGAGGCTGGAGCCAAGTGGCTCCCGTTCTGCTCCCACCACCGCAG
Seq C2 exon
GCACGGAGACCCGTGGCACTGGGCTGACCGCAGTGGCCGTCCAGGAGGGCAACTCAGATGTGGTGGAAGTCAGGCTGGCCAACAGGACCGGAGGTCTGGAGGTGCTGCTGAACCAGGAGGTGCTGAGCTTCACCGAGCAGAGCTGGATGGACCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994:ENST00000358321:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(28.7=98.0)
A:
NA
C2:
PF0009420=VWD=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCACCAACTTCACATTCA
R:
CACCACATCTGAGTTGCCCTC
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains