HsaINT0165219 @ hg19
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124179767-124181042:+
Coord C1 exon
chr12:124179767-124179844
Coord A exon
chr12:124179845-124180961
Coord C2 exon
chr12:124180962-124181042
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTTTGTTGTGTTTGTCTAGGTT
3' ss Score
9.72
Exon sequences
Seq C1 exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
Seq A exon
GTAAGATGAGTATATGCCAGTCATTGATCTTACAAACATACTTTAGTTCAACACTCCCAGCCATCAGGATGGTTATAAGTAACTCTCTCCAATTTAGTTTCTGACTCTGACCTTTTTCTTTATTTTCTCTTTTTCTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCTAGTCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTGCACCTCCTGGGTTCAAGAGATTTTCTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACACCACCATGCCTGGCTTTTTTTTTTTTTTTTTAATCACACAACACAGGAAGTTTTATTCATCTGCTACTTCTCCAAAGAGAGGCTTGCAGGGTTGCTCACTTTAATATAATTTTTATATTTTTAGTAGAGATAGGCTGTTGTTCACCGTGTTGGCCAGGCTGGTCTTGAATTCCTGACCTCAAGTGATCCCCTGGCCTTAGCCTCCCAAAGTGTTGTGATTACAGGCATGAGCCACTGCCCCAGCCTCTTTATTCTCTGTTGTGGCACTGTATTCATTTTTTTTTTTTTTGAGACGGAGTTTAACTCTTGTCACCCAGGCTGGAGTGCAATGGCACGATTTGGGCTCACTGCAACCTCCACCTTCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCAACACCCTCAGCAAATTTTTGTACTTTTAGTAGAGATGAGGTTTTGCCATATTGGCCATACTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTACGCCTGGCCGACATGGTATTCTTTTTGTGATAACAATGTATTTTTTTTTTTTACATAGTCTGTTGTACATAGTAACAAGTTGCTGTAAATGTGAAGCATTCTTTCTCTTTAGCTACTGTTTTTTTTGAGACCCGAAGTTGCCATCTTTCTCTCAAGGGTATTTTCGAAAGCTTCGCCTATGTGTTTTCTTTCCTTGTGCATGACTCTTGTATTATTTGCAGAGTTAGGGCTTGCTATGCTGGAGGAAACAGGCTCACGTTCCTTTGTTGTGTTTGTCTAG
Seq C2 exon
GTTACCAACTTGGCAAGCCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-TCTN2:NM_024809:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(9.5=100)
A:
NA
C2:
PF077736=DUF1619=PD(2.2=21.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)