HsaINT0166128 @ hg19
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114287435-114288348:+
Coord C1 exon
chr13:114287435-114287600
Coord A exon
chr13:114287601-114288204
Coord C2 exon
chr13:114288205-114288348
Length
604 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CCACTCCCTGTCATCCCCAGGCT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAAGCGCAACAGGAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCA
Seq A exon
GTAAGTGTGTGCCGGGGGCCGAGAGGCTGGGGTGGCGGAGCCCAGCGGTGTGGTACGTTTCGCTCTTTTAATATCGGGAACAGTTAAAACCATACAGAAAATGCCAAGTACAGCATAAAAGAATTTTTACCAAACGAGTCAGTAAGTGTGTGCCGGGGCCGAGAGGCTGGGGTGGCGGAGCCCAGCGGTGTGGTACGTTTCGCTCTTTTAATATCGGGAACAGTTAAAACCATACAGAAAATGCCAAGTACAGCATAAAAGAATTTTTCCGATCCATTTGCTGGCACGATGCTTTGTCAACTCCAGTGAGTGAGCACGTGGGCTGGCTCTGCACGTCTAGCGGCCCAGAAATGCACAAATGCCCACCTCACCAGCTGGGCTCGACACCCGAGAGCCCCCGGCTCTCCTTCTGGAACACACTCAGGCTTCGCACAGCCCCGTCTTGCCCTGCGTCATCTGTGGGGTGGGAGCGCTCCCTGAGGGCATGTTGGGGTGGCGGCTCCGTGAGCGGGGTGCCCCTTTGAGCCAGTGCCCATGGTCTACAGTTTAAGGATCCACCGGCCTTTTTGGATCATTTGGAAACTCCACTCCCTGTCATCCCCAG
Seq C2 exon
GCTTATGACCAGAAAAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-TFDP1:NR_026580:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(16.2=12.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGCAACAGGAAAGGAGA
R:
CTCTAAGTTCTGACATTCCTGAGCC
Band lengths:
310-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)