HsaINT0169626 @ hg19
Intron Retention
Gene
ENSG00000187054 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:27954]
Coordinates
chr4:68784691-68788644:-
Coord C1 exon
chr4:68788473-68788644
Coord A exon
chr4:68784951-68788472
Coord C2 exon
chr4:68784691-68784950
Length
3522 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TAATTTCTAACCTTTTCCAGGTA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTTGTGGTAAACGAGTTGTTCCATTAAACGTCAACAGAATAGCATCTGGAGTCATTGCACCCAAGGCGGCCTGGCCTTGGCAAGCTTCCCTTCAGTATGATAACATCCATCAGTGTGGGGCCACCTTGATTAGTAACACATGGCTTGTCACTGCAGCACACTGCTTCCAGAA
Seq A exon
GTAAGTTATTGACCTTAAGTTAGAACCCACTTCTGCTAAAAAGCCCTGAGTTTTGTCATATTCTTGGTAACAATTAATGTCTCAAATATTACTGAAGTAAAATAAGAAAAAGTTATTTCAGGTTCTTTTCTAAAATAATGTTACACTTGCATACTTAATCAGAAATTTGATGGGAATAAGTAACAGTCATTATCCTAGTATCCATCAATCATTTCCTCAAAGTTTTTAATAAGGAAACTGTGTAAAGAAATCAGAACTATTTTGTGACATCCTAACACAAAATATTCACTAATAACATGTACCATTAATCTTTTGTCAAACAATGCTCTCCACTTAAAACTAGTGTCTGTTTCTGCCAAACACTTGGGCCAGTCTCATACTGATCTTAAATAATCAAACTAATTCCAAAGTAAAATGGAAATTTTCAATAAATGCCGGAAGTTGGTAACCGTGATGATGGAGAACTGCAGATCAAATTTAGAGCATTGACATATGAAGATCTGTGGAATCAGAACAGTTTACAACCAAAATGAGAGATTGCTAGCATGATAAAGACAGGCACTTCAAAAGAGATTCCTCGGAGTATCAAAGGATTCATAGAGGCCCTTGGGCCACTCAATGTGACCTTCCCATAATAGAGCATCTCTTCACAATAGTGACACAAAAGACAAAGCTGAAGTGAAGAATAGCAAATTGTGCTATCCTATAATTGTTTCTGAATGCATACATTTTATTAAATATATGATTAAATGACTTTTTATAACTTTTAATCTTACTTTTCAAGATAATAACCAGTCATTTTTATCACTATTACATTTAGAATTTTAGATTTGTTTCTAAGTAGATTAACTGTATCGCCTTTCTTCTTCATTGCCAATTATTACAGTAATAACAAAGACTTCTTGAGTATCTCTATATAATAGGTGGCAGCAGGATTTAGTGGGAAAAATATGTCCCAGGCAGTTGGAGAGCTGGGCAAATTATTGAACCTTAGTGTATTAGGTAATAGATAGGCTAGATCTTTTCACATTCTTTTTGACCTATAAAATTCTAACTTTTGTTACTATAATAAATTTCATTTGCCTAGGAGCATAAATCTTTATAGAGACTCTTAATATTCCAAAGAATATACATATTAAGAATCTAGGCTTGGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGCAAGAGGACCACTTGAGCTCAGGAGTTCAAGACCAGCTTGGGCAAGATAGTGAAACCCCATTGGGCATGGTGGTGCCTACCTATCATCCCAGCTACTTGGGAGGCTAACGCAGGAGGATCCCTTAAGCCCAGGAGTTTGAGGCTCCTGCAAGCTATGATTGCACCACTGCACTCCAGCCTGAGTGACAATGCAAGACCCCATCTTAAAAAAATAGTAATATATTTTTAAAAATAATCTACATAAATTCTTAATGTTTGAAAGATGTGAGAGCTCAGTAAGCTGATATATTAGAAAGCCAGAAATCCCTTATGCTGGTGTCTGGTTTTTCAAAGTAATGGGAAACTTACTTTGCCAAAGTTAGCCATTTTTGTGGTAGATAGTTCTATTTTTGCAAATATCTTTATAGCATTGAACACCAAATCTATACTCTATTAACTTCTACCATCAATATTTGTTTTTCTTTTAATCTGGAACAACAGGAACCAATTTTATTTCTTCATTCATATAACAGCTATTCTTTAGTTTCTCTTTTTCAGACCAAACATAAAATGAGGGAGAATATCCAAACCATAAGTGAAAATAAATATCATTACTGTGAGCTTTAGTTTGCTAAGGATAATGACCTCCAGCCCTATCCATGTCCCTGCAAAGGGCATGATTTTGTTCTTTTTATGGCTGCATAGCATTCCATGGTGTATGTATACCACATTTTCTTTATCCAGTCTATCACTAATGGGCATTTAGGTTGATTCTATGTCTTTGCTATACCGAAGAGTGCTAGAGGGAGAGGATCAGGAAAAATAACTAATGGGTACTAGGCTTAATACCTGGGTGATGAAATAATATGTACAACAAAACCCCATGACACAAGTTTACCTGTGTAACAAACCTGCACATGTAACCCTGAACTTTGAAAAAAGTATATATATGCACACACATATATATGCATACATATATATGTGTGTATATATATGCATATATGTGTGTGTGTATATATAAAAAAAAATATATATATATATATATATATAATTACCTCATTTTTCCAGAACCAACTTCCAGATGCCCTACCACATTGGTTCTTATTCTCTGAACATTCGAGACTTTGTCAGTGTCTTCCTTAAAATATGCTTCCAATAACTAAATACACCAAGACAGATGTGTGACTAGTGTCACACATAACAAAATAAAGCAGGAAGTCTTCTGAAAAATACAAATAATGTAAATTGGTGGGAGACAGTGTTTTATAAAGGGAAGAGCAGAGAGAGGCAGGCAGATATGTGATGTGAATCAAATAGTTTAACCTATCCAGGCTTTATTTTCCTTAAGTATAAAACACAGTCTTTACTAGATGATCTTTCATTGCTACTAAATGATTTTTCCGATTCCTGTATGTACCATAATCCACCCATTGCCCAAGCCCACAAGCTAGAAGTCAACCGCATTTACCACATTTGATCATCTCTCAAAGGACTATGCAGTCATCTAATAGACTTTACCACATCCATTCTTGACCTTCAAGAATCTACTCCCCAGAAAGAACCAACATGTTTTTTAAAAATGTAAATGAGACTACATTATTCTCTGGCTTAATTATCCAGTAGATTCCCATATCACTTCAATAAAATTTAAGCACTTTATCATGACCTATAAAACACTCTAAAATCTAGTCCCTGCTTACCTCTCCAAGCTCACCCCCAACCATTCTTTCCCTTGTGTTCTGACTGCAGCCCATCCAACCCAAGACCTTGGGATTTTTGCCTGGAAACTTGTTTCCCTCATCTCCTCACACTGACCCTCTTTTACTATGTCTTAGCCCAAATGCGTTATCAAAATAATCATAATGACCTGTTAGTACTCTATTCCGTTACCCTATTTTATTTTGTTCATAGCCTTTATCAATGTTTAAGATTATTTATCTATTTGTTTGCTTGCTTTGATCCTTTTCCTTCTCTGGAATCTTATACTCCTGTGAGCAGGCACCTTAGGTCCTGTTCATCACTTTATCCCCAGCAGTTCAGATAAGGCTCAGCACACAGATGCTCAGTAAATATTTGTGGAAGGGATAAATGAATGATATTTTATGTGTATTACAGTTCTAAAATTCAATAGTTTTGTATTAAATATCAGTTCTAATATGGCATTTATATGATTTTATCTTTCAAAACATTAGCAATAGATTATATTTAAATGATAAAAGAAAACTATAACTGCAGCCAAGTATTCTCAGGATTGTATTTCTCTTATATTAGCCTAAATGCAATTAATCTAGCTCATATACTTTGGGCAGCTTATATATATTCTGTTAATTTCTAACCTTTTCCAG
Seq C2 exon
GTATAAAAATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAATGTCAGAAGATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAGGTCTCTTCCAGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCCAACCAAATTTGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187054-TMPRSS11A:NM_001114387:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)