HsaINT0170529 @ hg38
Intron Retention
Gene
ENSG00000116147 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr1:175365875-175367297:-
Coord C1 exon
chr1:175367208-175367297
Coord A exon
chr1:175366139-175367207
Coord C2 exon
chr1:175365875-175366138
Length
1069 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCATTTATGTCAATCCACAGAAC
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATCTGGTACCTGGCACTGAGTATGGAGTTGGAATATCTGCCGTCATGAACTCACAGCAAAGCGTGCCAGCCACCATGAATGCCAGGACTG
Seq A exon
GTGAGTAGGAGGACTGCTGAGGAAGAAGACCAGGTTAGCCTATAAGCCTAAGGAGTCATGGAGGCTCGTCCCAGCAAAAATTAATCAGAAAGCAATGTCTTCCAGTGAACAGGGCTCTGGTGACAACTGTCAGCCTAGAAACAACATCCACCCTATGCCTAATCCTTGATCTCTGACAGGCAGGACAGAGTCACCCTCTTCCCCACAGACCTGTGCTCGGTCCCCCGTGGTCTGAAGAGCTGCTCAGGGCTGTACAGAGCAGAGGTGGAAAATCCTAAATAGGTTGATGCCATTGCAGGCCATATTTTTATCTAGACCACCCCGACAGCAGGCAGAATGGGGCATCCTCGCCCTGCATACACCACAGAGGTCCTCACAAACGCCACTTGGGTGAAGGTCTAGACTTGCAACAACCCATTAAATCTGAGGGCAGAAGAAAAGTCCAGCTGAGACCCTTGCTGCTCTGGATTCAGCAGTTTTGCTTCCAAATCCTGGGTAAATTTCAAAGTCATTTCAGCACCTATGGTACTAGCAGCCTGGGCTGGGCTAGGGATTTTAGACCAGTCCTTGTCCCAAGGTTCAGCCTCTCTAGAGAACCACATGGACAAAAGTCTCCAGGTCCTCAGATCTAGCTGCCTGCCTGGCTATGGTTAGAACAAGTCAAAATAGCCTCAGGGTTGGAGGGTGGTGCGCTTCTGTTGCCAGGAATGGCATATCCCTACTTGGTGGTAGCTACCATTTTATCCTTATTGGCTCATTGAGAAAGGATGGGAGAAAATGAATATGGCGAGCTTGAAAATCAGCAGCCAGCTTTGTCCCAGAGGTGGATGCAATCCAGTGGTATCAGAGCTCATCACGGCTTTCTTCAGATTGTTCATCTATTTGCCAAGCCCCTGGCCATCATTCAGAGGGAAGGTACTTAGCAAAATATTAGATAAGTGTCAGCAATGACAAGCTAGTGCTCATAGTCAGCAGGCCTGCTGATAGCTTGGAAACACACAAAGCAGGCCAATAAATACTGCCCTCCAGGGGAACACATGTAAAATAGGCCATTTATGTCAATCCACAG
Seq C2 exon
AACTTGACAGTCCCCGAGACCTCATGGTGACAGCCTCCTCGGAGACCTCCATCTCCCTCATCTGGACCAAGGCCAGTGGCCCCATTGACCACTACCGAATTACCTTTACCCCATCCTCTGGGATTGCCTCAGAAGTCACCGTACCCAAGGACAGGACCTCATACACACTAACAGATCTAGAGCCTGGGGCAGAGTACATCATTTCCGTCACTGCTGAGAGGGGTCGGCAGCAGAGCTTGGAGTCCACTGTGGATGCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147:ENST00000367674:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.281
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(26.5=71.0)
A:
NA
C2:
PF0004116=fn3=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTACCTGGCACTGAGT
R:
TCCACAGTGGACTCCAAGCTC
Band lengths:
343-1412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains