HsaINT0171595 @ hg19
Intron Retention
Gene
ENSG00000132958 | TPTE2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:HGNC Symbol;Acc:17299]
Coordinates
chr13:20056628-20067043:-
Coord C1 exon
chr13:20066990-20067043
Coord A exon
chr13:20056688-20066989
Coord C2 exon
chr13:20056628-20056687
Length
10302 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTTTTTTGGTGGCTAAAGTAT
3' ss Score
0.9
Exon sequences
Seq C1 exon
CCCACACACAAGTGAATTTAAAGGAGCAGCCCTGGTGTCACCTATCAGTAAAAG
Seq A exon
GTGAGTTATAAATACATGAAGACACACGTATGCATAAGAGTGCATAGAGCTGTACACACACCAAGCACATACACAAATATATCCATCCATCTTCATCCATACACACTTTTGTCAACACATTTACACAAACAAACCCATGCACAAAGTGGAAACACCAAACACGGAGACAGATGGACATTTGTGGAATTTACTCTCAGGAGCCTTCATGGCCATACAGAGTATTTTTTAACAAGGTTTCCAATTCTTCTCATTGTAGCATTTGCAGGTAACTTTGCATCCTTTTTTGAAGGAGTTGTATAAGGAGGTCAGTTCGTAGGAGAGCTGCTTCTTCCTGTTAGTGTATTTGTCACCCTCAATTTCTAGTAGGTAATTTTTTAAGGGATTCAGGTTTCCTGAGTTTGAGACCCTACCATAGTGTTCCAAGAAAGGAGAGAATCCTATTTGCAACATGGATGAGATAGCAGCCAATAAGGAGTAGTGAAGCCCTGGGAAAAAAAGAACAGAGCTAATGGAACGTGGACTTGTCCCACACCCTCGAGAGCTCTGTCCACATGTGAGGTTGGTGCCTAGACCCAACCCAAACCCACCACCTCATTGGATGCCGCTTTCCTCAGGTGCGCGGGTACTTCACTGTGTCTCATGGGCAGGAGAGACTAGCATGATCAGTGAAAGGAAGGAGATGGTGGAGGGTTTTCCCAGTCATGTGAAAACCTCTCCTGGAAATAAATCATAAAGGTGTAAGTAATACGGAAAACCTGATTCAAGTTAATTATAGTGTAATGCTCAAGAAACCTTGCAAAATGAATGAGATTTTACAGAAGGAATAAAAGGATTGTGTTTAATCAGTGGCTGATTAAGGGAACATCTAGGTAAGAATTCTGTAGTTGCTCATTAAGCAATAGCATGTGAGTTTTGTATGTAGCATTGATTTTTAAGCCAATAAATAAATTTTTAAAAGAATTTATTTTATAGGACGTTGGACGCATGGGCAAATTAAAATGTATTTCTATTATTATTATTATTTTTTGAGATGAAGTCTCGCTGTTGCCCAAGCTGGAGTGCAGTGGCGCGATCTCGGCTCCCTGTAACCTCCATCTCCCGGGTTCAAGCGATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGTCATGTGCCACCATGCCCGTCTAATTTTTTGTATTTTTGGTAGGGGCGGGGTTTCACTATATTGGCCAGGCTGGTCTTGAACTCCTGCCCTCGTGATCCACCCGCCTTAGCCTCCCAAACTGCTGGGTTTACAGTCATGAGCCACTGCGCCTGGCTAAAATGTATTTTTAATATGTACATAGGTTTAATTTATATAAATTTAATTAATCTCTGATTAACTGACCATTGGTAAATGAGTCTTTGTTAACTGTTGAATTTTACTTACTGGGCTTATGTGGTAGGATTTGCATACCCTCACTTATTATATATGTATGTATTTCATATTTATGGAAAATCTACTCCTTTTGGTGCAAAAAATGTATTTGCTAATAGTGTCAAAAAGAGAAATTCATTATATGTCTATGTACCTTTTTACTCCATCAGCACTGTCTTCAGTGAAATGACAACAGTAACACATGAAGGGACCTTCCACAAAATTTGAGGTTTAAGTAAATAAAAAGCTAGATGTAAACATATATATGTAAATACACACATAGACACACACAAAAGTATACATGTAGAAAGGAGAGATTCAGATTTGGGAAGTTCATTGTATGGAGCATCCATAACAATACAGAGTGTTTTAGACACTGTTTTCTAAAGTCTTATTTCTGTAGTATCTGCAGGTACCTTTCTTTCTTCGATCTAGTTGGATAAAAGAGGAATAGGTCTTAAGAGGAATGCTTCTTATTCCTATTCCATTGGTCACCCTTATTTAGCAGCACCCTGAAACCTTAGGAAAATATGAGAATGTGTGTAGTGTATGACACTCTACTAGAGTGAGCCAAAAGAGGCAACAGTCCTATTTGGTGCAAGGAGGAGGTAACAGTGGGCAGGGAGCTGAGGAGCTCTCAACAGAAAAGAGCAAAGCTAATAGACCCCTGGTCTCTTCGTCTGTTACCACATGAGGCTACTGCCCCAAAGGTAAACCCACCATCAGATCGTATGCAGGCCCTGCCTTGGGTCTGTAGTTACTTAACCCTATCTGAGGGGCAGGAAAGACATCCATGATTGGTGAAGAGTTACTGTTGGTATTTGAGAAGGCAGAAAATTACAAGGGCAAGCAAGGTGGGTATTTACAAACTGAAGTTGATTTTATGTAAATTTTGCCAGAAACAGTAACTTGGGGATGAGGTTTAGGAGTAAAGAAATGTATATAAACTTGATTCATTAAGTTTTTTTCACAGGCTGAAAAATTCCATTACAGACATCTAAAACCTCATTTCCAGAGAAAAATTAAACACCATGTTTCAAAGAAATAACTGATTAATGTCCATTTTTCAGGGTAACTAGATTATAAATTGTAGAATAATTATTGCTAATTTGTATCAGAAAATTAAGTCTAGGATAACATGTGGAGTCTTGCTATGTTCATTTTTAATCCTTTAGCTATTGAATTAAAAAGAGCAATGAGTGGTAGAGTCATCAATGATGGGTGAGATTTCAAAATATGGAGAGAAAGAAGAGAGGGATATATTAAGATTGGTAAAATTCACTCACAAATGAAGTAATAAAGAACTGCACTTAAGTTGTGATTCATTAGATTGTTTGTTAAGGCCCAAGAGCACCTTTACATAATATAAGCTTTTCTTCTAGGAAAAAATGATATATTAATAGTAGATTCCAAATCATTGACATATACATTTTCAGAGTTCAACCAGTTTATAAATGTAGAGCAATTGTACATAACTTCAACCAGAAAAGTATGTCTCTGAAGTCACTTGACCTGATGTGTACATTTTTAATCCTTAGCACTGGCCCGGATAAAATGACATCAGTAGTCTTTCACTACTTTGATATATCTTTGATATAACTCACCTTTCAGTGGTGGTGTCACTGAAAACTACTGATGTTATTAATTTGAGTCAGTGCTAAAGGATCTACACACACACACACATATAACACACATGTATATATGTGTGTGTGTATATATATATACAGATATATCTTTTAGCTATATATGTAGTATATATAGATATATAAATATGTATTTGTGTATATAGATATACACATATCTATATACATATGTCTACATATGTGCATATTTAAATGTGTGTATATATATATCTATATATACATATCTATGTATAGATATATTCTTTAGCACTGACCCAAATTAATAACATCAGTAGTCATATATATATCCTCTAATATATATATGAGCATGTGTATATATATGTAAACATATATGTATATATCCTTTAGCATATATATGTATATATACACATATATAGTTTACATATACATATATGTGTGTGTATATGCAGGTATATCTTGTTTTATTGTGCTTTACTTTATTGCCCCTCAGATATTACTTTTTTATAAACTGAAGGTTTGTAGCAACCCTGCATTGAGCAAGTCTCCTGATTTTATTTTTCCAACAGCATGTTCTCACCTTGTGTCTCTGTCACATTTTAATAATTCTTGCAATATTCCAAACTTTTTATTATCATATCTGTTATGCTGATCTGTGATCAGTGATCTTTGTTGTTACTATTGTAATTGTTTTGGGGCAACACGAACCATGCCCATATTAAGGTGACAAGCCTAATCAATGACATGTTTGTTCCGACTGCTCCACTGACTAGCCATTCCCCCATCTTTCTCCTTCTCCTTGGGCCTCCCTATTCCCTGAGTCACAACAATATTGAAAGTAGGCCATTTAATAAGCCTATGATGGTCTCTGAGTGTCCTAGTGAAAGGAAGAGTCACATGGCTCTCACTTTAAACCAAAAGCTAGAAATGATTGTGAGCAAGGCTAGACTTCTTGTAGCAGTTCAGCCAAGTTGTGAATGTAAAACAAAAACAAAAACAAAACAAAACAGAAAAGCCAAAAAACTTCTTGAAGAAAATTAAGACTGCTGCTCCACTGAACATACAAATGATGAGAAAGCAAAACAGTCTGATTGCTAATCTGGAGAATGTTTTAGTGGTCTGGATAAATGATCAAACCAGCCACAGCATTCCCTTAAGCCAAAGCCTAATCCAGGACAAGGCCCTCACTCTCTTCGATTCAATGAAGCCTGGGAGAGGTAAGGAAGCTGCAGAAGAAAAGCTTGAAGCTAAAAGCTTGGTTCATGAGGTTTAAGGAAAGAAGCCATCTCTATAACATAAAAGTGCAAGGCAAACAGCAAGTGCTGATGCAGAAGCAGCAGCAAGTTATCCAGAAGATCTAGCTGAGATAATTGATGAAGGTGGCCAAACTAAACAACAGATTTTCAATGTAGACAAGATAGTCTTTTATTGGAAGAAGATGCCATCTAGGACTTTTATATTTAGAGAGGAGAAGTCAACGCATGCTTTCAAATCTTCAAAGCAGAGGCCAATTCTCTTGTTAGGGGCTAATGAAGCTGGTGACTTTAAGTTGAAGCCAGCAATCATTGACTATTCCGAAAATCCTAGGGCCCTTACGAATTATGCTAAATCAAGCAAGATGGGTGAATAGAGATGCCTGGTGCTCATCTCCCCTACGAGAAAAAACCGAGGCAACAAATACACGTCTAAGATTTGATTAGAGTATCAAAGGCATAGTCCTGGAGTGCAGCAAAGGAGTGCAGACACATCTGTGGTGACTGGAAGTTGCCACAGCATGGAAGCACTCAGCCTGTGCAGCCCCTTCTGCCCCATCTGGATTGAATTGGCCCAGAGACAGGAGGGACTTCTCATTGCAGGGTGAAGGTAAGCAGAAGATCCCTGTCACCCCACTGCCATCACAAACACAAAGTCTTTACAACAGGAGAATCTCACAGTCTTTGCAAGCCCTGAGGCCAGTTTGGAGTACTGCCAAGAATTGACAAAGCTGCATGTCCTGGACTAGGAGTACAAGGTGAAGACTTCCCACCCCCAGAGACTTAAGCTGCAGCAACACAGCACCATCTTGAGACCAGAGTCATCTCTTGAGTGTGCCCTCCTCTGGGGGCCAGTAGCCACTGTGCCTCTCCAGCACTGGAGCTTTATCTTCAGTACACCAAGCCCACATGGGTGGGTTAAAGCCACAATCCCAGCTGTGTGGAGGTTGGTCCCAGGACTGGCTGTAACTCAAGTAATGCAGAGCAGGGAAATCAACCCCCACCACCACACTTCCAGACAGAGGAATAATCTGCAGTCCCATCCAGGGTAAACTCACTCTTAAGACAGCCAAACCACTGCAAGCCCTCTCCCAAGTGGGAGAGGCCCCTAAGCCTCTGAGCAGCTGATACACCCCCAGGTCAACAGAGTGACTATGAGCCCATGCTCAGGACCTGAGAAACAGCCTTGCAGGCCCCATCCACCACAGACATGCTCCTGGCCTGCCCAGGAGCCCTCTGCCTTTGATAAGGGCCTGAGAAACAGTCCCACAGGCTGCCCCTAGCAGGCACACCACCGAGTGGGCCTTGCACCTGTGTCTCAGACCTGAGAGACAAGCAGCTGTGTATGCCCAAGTCTCAGGGCCGAGAAAGAACCCTGGGAGCTTACTCTGGCCAGCAGACTGTCAGGCCAACTAAGCAGCCACATACCTATGTCCCAGCTTGAGGAACAGCCCTTTAGGCCACCCCCCACAGAAATACTCCCAGGCCAACTAAGCAGCTGTGCAACCTTGCACGAGCCTGAGAAATAGTCCTGTATCCATTCCCAGCAGATGCACCTCCAGACTAGCCAATCAGCCATGAATGCCCATGTCCTGGACCTAAGAAAGAGCTCCATGGGCTACTTCCAGAAGACATGCCCCTAGGCCAGCCGAGCAGCCTCGTGTCCACATCCTGGCTTATAGAAGCAGTCCCCTGGGCTTCCCCTGGCAGGCACCACCCAGGCCAGCTGAGCAGCAGTGTGCCCACATCCTGAGCTAGAATAGCTCTATGGACTACCCCCAGCAGAAACACATCCAGGACAGCTGAGAAGTCATTTGACTGTATCCCAGGCCTGAGAAACACCCCCTCTTGGCCAGCCCTGGCAAAGATATCTTCAGTCCAGCTTAGGAGCTATGCAGCTGTATATTTGGCCCATGAGTTTCCCCCAGCAGACTGGCTGCAGGCCAGATGAGCAGCTGTGTACCCACATACCAGGTAGGGGAAACAGCCCTTCAGGCCACTCCTGGAGTGCATGCTTCCAGGCCAGGCAAACAGCTGTGTGCCTGCGTCCTGGGCCTGAGAAACTGTCCTGCAAAGCACATCTGGCAGTCATGCCCTGGTTGAGCAACTGCATCCCCATGCTCCTGGCTAGAGTGACAGCACCATGGCCAGCCGCATAAGGCCATACTCCAAGTTTTCTGACCCAGTGTATGCCTGCACACACCCCTACCCTGAGAAACAGCCCAGTGAGCCCACCCCTGGCAAGGCTGCACCACCATCACCACAAACTTCCTTAGCCGAGGCCACTGAGTAACTTGCAAATGTTACTAGTGTAGATCACAGCTGAATAAACTACATGGAGACTACACTTACTGCATCCATGTAGAACCAAGGCCAGTATACCCCAATGAACTGACATCCGAGACCTATTCATAGAAATAAATTCATACAAGTAAACCTACTCCATAAAATTGGAAAAGGTGACTTTTTCACCAGATGCATAGAAATCAATTTAGAAACACAGCAACCGTGAAAATGCAAGAAAACATGTCATCTACAAAGGGAAATAATAATTATCCAGTAATAGAACCCAATCATAAACATAAGAGATGACAGAAAAAAGAATAATCTTAAGGAAACTCAGTGAGATATAAGGTAATACAGATAGACAAGTCAATGAAATCAGGAAAACATGATTTGAAAGAGAAATTCAGTAAAGATACAGATATCATAAAAATAACCAAACAGAAGCCCTAAGAGCTAAACAGTTCAATGGATGAAATGAAAAAATACAATCAATGGCTTTACAGACAAGAACAAGCAGAAGAAATAATTTCTGAACTTGAAGACAAGTCTTTTGAAATAACACAGGCAGGCAAAAAAGGATAAAAAAGAATGAAAAAAGCCTACAGGATTTATGGGACACCATTAATTTGATCAAATATTCATATTATGGGCATTCCAGAAGGAAAAGTGAAGAGAAAATATGAGGAAAACATATTTAATAAAATGAGAGCATAAAACTTCCTAACTCTTGAGAGAGAGCTAGACATCTAGTTCCAGGAAGATCAAAGAACCCCAAATACATTCAACCCAGACATTATAGTCAAATTGTGAAAAATCAAAGACAAAGATTTTTTAAAATAGCAAGAGAAAAGTAACACATTTATAATGGAATCCCCATTAGACTAACAGCTGATTTCCCAGCAGAAACCTTAGGCTAGAAGAGAATGGGATGATATATTCGAAGTTCTGAAAGAAAAAAAAAACTTTCAGCTGAGAATATTATACCCAGCACAGCTATCCTTTACAAATGAAGAAGACATAAAATCTGTCATAGATAAAGAAAAACCAAGATAATTCATCACCACTAGACCAGCCTTACAAGAAATGCTCAAGGGAGTCTTACATCTGGAAGTAAAAAGATGATAACCACCATCATAAAAACATGCAAAACTTTAAAAGTTACTGTTAGAGTCAATGCATAAAGGAGAAAGAGAAAGGAATGAAGCCTTATCACTATAGAAAACTACCCAACTTCAAAAGTAAACAGGAAGAAAGGAATAAAACATATACAAAACAACCAGAAAACAATAAAATGTTGGAAGTAACTCCTCACCTACCAATAATAACTTTGAATGTTAATAGATTAAATACCCCATGAAGGATATAGACTTACTGAGTGGATTAAAAAATAAGACCTAACTATATTTTATCTAAAAGAAACTCATCTTACCGGTAAAGAAACACATAGACTGATAATGAAGGGATGCAAAAAGATATTCTATGCAAATGGAAGCCAAAAGTGAGCAGGGATAGCTATACTTGTATCAGACAAAACAGAGTTCAAGTTAAAAACCATAAAAATGGACAAACAAGATTATTTTGTAATAATAAAGGGTTCAATTCAGCAAGAAATATAATTGTAATATGTGTATAATTGTAAATATGTATGCACTCAAACACCAGAGCACCTAGATATATAAAGTGAATATTAATAGATCTAAAGAGGGAGATAGACCCCATTACAATAAGAGTTGGGCACTTCCATATCCCACTCTCAGCATTGGGCAAATCATCTAGACAGAAAATCAACAAAGAAACATCAGACTTAAACTCCACCATAGACCAAATGGACATAAATAACAAACATATACAGAACATCTCACCTAACAGCTGCAGAATACACATTCTTTTCATCAGCACATGAAACATTATCCAAGATAGACCATTTGTTAGGTTACAAAACAAGTCTCAACAAATTTTTAAAAATTGAAATTCTATCAGGTATCTTATCTTACCACAGTGGAATAAAACTAGACATTCATAACAAGAGGAACATTCAAAACTATACAGACATATGGAAATTAAACAACATGCCCTTGAGTTACAATGAGTGAAGAAAGAAATTAACAATGAAATTTAAGAATTCCTTGAAACAAATGTAACTAGAAACACAATATACCAAAACAGGAGACACAGCAAAAGCAGTTATTGAGAAGTATGTTTTTAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTTTTCAGCAACCTATCGCAAGGACAAAACACCAAACATCACATGTTCTCACTCATAGGTGGGAATAGAACAATGAGAACACTTGGACACGGGAAGGGGGATATCACACACTGGGGCCTGATTGGGTAGGGGGAGGGGGGAGGGATAGCATTAGAAGATATACCTAATGTAAATGACGAGTTAATGGGCACAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCACATTGTGCACATGTACCCTAGAACTTAAAGTATAAAAAAAAAGAAGTATGTTTTTAGCAATAAATGCCTGGATCAAAAAATCTAGAAAACTTTCAAATAAACCACTGAACAATTCTACCTCAAGAAACTAGAATAGTAAGAACAAACCAAACCCCAAATTGTTAAAAGGAAATAAATAATGAAGACCAAACAGAAATAAACAGATTTGAGGCAAAAATTACAAAAGGTTAACAACAAAAAGCAGGTTTAAAAAATATCAACAAACCATTAGCTAGACTAATTAAGAAAAAGGGAAGAACCAAATAAGTAAAATCAGAAACAAAAAAAGAGACCTCATGACAGATATGACAGAAATAAAAAGAATTATTAGAGACTATTATGAGCAACTCTACAATAAATTTGAAAACCTAGAGGAAGTGGACAAAATTCTTGACCATACGACCTACCAAGACTAACCAAGAAGAAATAGAAAACCTGAACAAACCAAAAACAAGTAATGAGATTGAATCAGTAATAAAAAGGCTTTCAACAAAGTCCAGGACCTGATGGCTTCACCACTTAATCCTCACTTGTGAAAGGAAGAGTCATTTGCCACAGCAAACTTCATTTTCCTATTTTAAGAAATTGCCTCAGCCACTCCAACCATTGGCAACCACCACTCTGATCAGTCAGCAGCCATGAACATGGAGGCAACGCCCTCCACCAGCAAAAAGACTGTGACTTGCTAAAGGCTTAGGTGATCATTAGCATTTTTTAACCAATAAAGTAGTTTTTAATTAAAGTATGTACATAAGTTTTTTGAACATAATGCCATTGCAAACTTAACAGGCTACAGTGTAGGGTAAACATAACTTTTATATGCACAGGGGAACCAAAACATTTGTGTGAGTTGCTTAATGCAGTTTTTGCTTTATTGCAGTGGTCTGGAATGAAACCCACAATGTCTTTGATATATGTCTATACCTATATTATTTATATATTATATATCTGTATACATATTCTTTTATATATCTTTATATACATATATATAGAAAGGGACAGAGAGAGAAAAGAAGATAAAAATATGCAAAATTAAGTGTTGGGAGTATCCATGAGGAAAGAGTTTCTGGTTAATGATTGTAATTTTCTTTCTTAAATATTAGGTCTTCCAGTGAGCTAAGTCATGTTTACTATATCCTTTAGATTCATGGGATTCTTGTTATTCAAATATATTTTTCATCACTATTTTGTGTAGCAAATATCTAATGATATATTTTTGCATTTTTTTTTGGTGGCTAAAG
Seq C2 exon
TATGTTAGAACGACTTTCCAAGTTTGAAGTTGAAGATGCTGAAAATGTTGCTTCATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132958-TPTE2:NM_199254:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)