HsaINT0171686 @ hg19
Intron Retention
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139815490-139818452:+
Coord C1 exon
chr9:139815490-139815667
Coord A exon
chr9:139815668-139818303
Coord C2 exon
chr9:139818304-139818452
Length
2636 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
CACCCCTCCTGCCTCCCCAGCCT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTGCAGCAGCTGGAGAGGAGCATTGGCCTCAAGGACCTGGCGATGGCTGACTTGGAGCAGAAGGTCTTGGAGATGGAGGCATCCACCTACGATGGGGTCTTCATCTGGAAGATCTCAGACTTCGCCAGGAAGCGCCAGGAAGCTGTGGCTGGCCGCATACCCGCCATCTTCTCCCCAG
Seq A exon
GTGTGGTTCTAGGACCCCCACCTCACTGCAGCTGCTGTTTACTTGGCACCTGGGTCCCCTCACCCCTGTGACCACATAGGATGGCTCCCAAGGGTGGGGCTGGGATACGACCCCCAGTGATACCGGGAGCAGCTACACCTCCCTGAGTGGCAAGTGGGGTAGCTGAATATGGGCTGGCCGGTGGGTGCCCTCGGGCAGGGGTCGGGGTAGGGGGGTTGGGCCGGCTGCCCTCCTGCCGTGCCAGCCCTCGAGGTGTGCCCCTCGTCACCCACAGCCTGGTCCTCTGGCACACAGCCCTAAAGCAGACATTACATCAACAGGCTCTCCTGCCTGATCACAGCTCCCAGGAAGACAGGGCGGGTGGGGGTGGCTGTGGGGGTGGGACATGGCTCTCAGGGCCTTGGAGCTGAGCTAGTCTGATCCCTCCCAGGTTCATTTTCCACACGGAGCTCAGGGAGGGTGTTTCTCACACTCCCCCACCTTTTTTTTTTTTAAACCCCAACTATGGGGTCTCTTGAGAGGGTGCTCGTGGGGTCTCCCCTGGAGGGCACTGCTGGAGAGGGGGTGGGGTGGTGGCTGCCCAGCTGCAGGCTCCTGCCAGGACTGTGCTTCTGGGCGCTGCAGTCCAGAGGCGGCCCCCCTGCTGTCCCTCGAGGCCCTGGCTGACCTTGTGGCGGCCCCAGCCATCATCTCGGCCCCAACTCAGTCACTCCCTTCTTGGGCTTTGTTGCCATGGCTCAGAACACGCCCTCGTGCAGACTTTATTTTTAGGCTGAGTTGGTGAACCTGCTGATAGAATCTTAGGTTCTAGGATCAAGGCCGAGATGCTGTAGGCACCTTTCCTGTTTGAATTTAGCCTGGCACTGCTCGTGAAACTCAGCACTGGGGGCCATGGCAGTCCTGTGCTCTGGCGCCCTCGAGGCGGAAAGAGACCCAAGCGTCATCTGGAGGGGCCGCCACATTGTGTGGTGCCTGCTGCCAAGGCCTTCAGCAGGGACCAGAAACAAAACTCACACTCTTTCTTCTCTGAGTTGAGACTGGAAAAATGAAAGATTGTTTTAGGGGAAACTTGAGGGAACAGTCTGGGCAGCCTGCAGGGCATGGCCCTGTTCCTCCAGGGCTGGGAAAGTCAGCACTGCTTTCTGGTGGCGACCTTCCCTCTGCAGCTGCTGGCTCAGCCGATTGTATATGCTGGGAGCTCTGCACTAAGCGTTGGGTGAAGGGTCAGCATTGTGGAGGCCCTGCCACGGAGGTGGTCTTCTTGGGAGCTGCACTCAGGCAAGAGGACCTGTTTGTGTGGAACATCTGCTTTAAGCAATGCTGGTGAACACAGCTTGTGTGCGGCACGCGTGCAGGCTGAGGACAGGCAGAATGGGCCTGGGGGCACGGTGGAGGACGAGGATGGGGAGGATGGGCCTGGGGGCACGGTGGAGGACGAGGATGGGGAGGATGGGCCTGGGGGCGTGTGGAGGACAGGGATGGGGAGGATGGGCCTGGGCACGTGGTGGAGGACGGGGACGGGGAGGATGGGCCTGGGCATGTGGTGGAGGACTAGGACGGGGGGAGGATGGGCCTGGGGGCATGTGGAGGACGAGGATGGGGAGGATGGGTCTGGGGGCACGTGGTGGAGGACGAGGATGGGGAGGATGGGCCTGGGGGCACGAGGTGGAGAGGACTAGGACAGGGAGGATGGGCTTGGGGGCACGCGGTGGAGGACGAGGATGGGGAGGATGGGCCTGGGGGCACGCGGTGGAGGACGAGGACGGAAGGGTGGTCCTGGTGCTGCCACAGTGGGGTCCCTGCGTGCAGACCTTTGCACACAGTGTTCTGTCATGTGACTTGGAAAGCAGCCTCTGCCGGGTTCTGGCTGTCACTCACGTCTGTGTCTTGTTGGGTGGGAAGGAAGTCGACTCTTCTTGTTTTGGGGTTCACTCTAGCCAGTGCCTCTTCTGAGGCAGGCTTGGGGCCCAACCTAAGCCCTGGGCCGGTCAGGGCTCCCTCTGTGGCTCTGCCGAGGTCCCAACCACTGCATTTAGTGGATCTCGCCATGTGGCTCTGCTCATCTTCTTAAGTTTTGGGGGTTACATTTGGGATTCTTAGAAATGCTTTTTCTGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGTGAGGCCAACACGTGTGGATCGCCTGAGGGCAGGAGTTTGAGACCATCCTGGCCAACATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGTCGAGCGTCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGATCCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCAGCCTGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAACTTTTTCTAAGTACTACCTTTTTTTTTGTAATGAAATTTGTTTTCATTGGAAACTAACTGCATAGTTTGAGGGAAAAAAAACTTTTCTTTGCACCCCAGAACCTGAATGTTTCTTTGTAGGTGTTTTTGTCCCTGGGGGAGGGCAGCCAGGCAGGAAGAGCCCTGCCCCGCCCTTGCTGAGTGTCAGCTCACCAGGCACCCCTCCTGCCTCCCCAG
Seq C2 exon
CCTTCTACACCAGCAGGTACGGCTACAAGATGTGTCTGCGTATCTACCTGAACGGCGACGGCACCGGGCGAGGAACACACCTGTCCCTCTTCTTTGTGGTGATGAAGGGCCCGAATGACGCCCTGCTGCGGTGGCCCTTCAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191-TRAF2:NM_021138:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(27.5=63.3),PF0091721=MATH=PU(15.6=36.7)
A:
NA
C2:
PF0091721=MATH=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)