HsaINT0171689 @ hg19
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]
Coordinates
chr14:103363598-103369766:+
Coord C1 exon
chr14:103363598-103363738
Coord A exon
chr14:103363739-103369591
Coord C2 exon
chr14:103369592-103369766
Length
5853 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAACACCTTTGGTTTGGAAGCGA
3' ss Score
1.84
Exon sequences
Seq C1 exon
GTTTCCTTGTTGCAGAATGAAAGTGTAGAAAAAAACAAGAGCATACAAAGTTTGCACAATCAGATATGTAGCTTTGAAATTGAAATTGAGAGACAAAAGGAAATGCTTCGAAATAATGAATCCAAAATCCTTCATTTACAG
Seq A exon
GTAAGAATCTTAGGACTACGGCCAGATCAAAGGGTGGAGGAGCTTGCCTGTGTTCCCCTTAAGGGTTTCTTAGCAAACTCTTTGAGCTGAGTCCTTGACCTTTGCAAGCAGAAAGGCAACTGATTTCTCTGGCCTAAGTGAAGGCTTAGAAAAGGCAGCTGGACTAGCACAGGCCCGGCCTGGGAAGCCGCAGGTCAGCGTTTTCAAACTGCCTTTTCTCTGGAGAGCAAGCCTCCACCCCTCTTCCATGCCTTTGATCTACCGTTGGAGAAATAAGATGCGAAGCTTGTATTTGTTAAATTAGCTGTTTTTATTATTTAAGATTTCATATTGTTCATGAGTAGTTGCTGTGTGCAAAGTCTCACTTCCTGCAGTGAGGTGCTGTGCAGCCCAGCTACTCTGTGTGAGCTTTCCAGTGACACGCGCTCACCCGCTGGGTTTCACTGTGGAAATCCACACGCACCTCCAGAAGAACAAACCAGTGAACCTTTGCTCCCCTGAATAGAGGCGATGATGTAAAGGGGACTGATGAAATGTCGCTTCTCCTGTCTTCTGTCGTCACAGGTGTCTGTGGGGTGCTTGTTAATAGATGATCATTGTAGATGCTCTCTGCACATTCACTTACTCGTGTGCATTTGTGATAGCACTTCCCATGGGTGTGTCACACACCGTGGAAGAATCACTCATGTCACTGAAGGGCCTGAACTTAGACGGTGTGTCCCTAGATTATCTGGAAGAGAAACTACTTCTAATAGCACAGAGTCATGGCATCTTTGAGAATGCCTTTTCTCCAATTTTTGACATTGGAGATGAGTCATAGTGACTTGAATTGCGTAGGGATTTATTAAATTAATTTCATTTTTATTATATTTTGTAGTTATCCAGAGAGAGAAGGAGAAAACACAATGAAACATTAGATTGTATTAGAAAAGGCACAAGTCATTAGCATTAAATCAAGCCAAATAAAGTACAATGTTTCTTAAAACACCAAGCCTCCCGCTGGAAGCCCCTAGCATTTTGCTGAGGGCCCAGTGATGTGTCAGTCATCAGACTGGCCAAGGCGACTGGTCAGGCCACTGCTGCGGGGCCCTGGCCATCCTGTGGCCCGCCTGCACCTGCGCTCCCTGGCAAGCAGCTCTGGCTGTTCATGAGATTATTGCTGTGTTTTGACCTGGGGCTCAGAGAGGCACTGGAAAGGCCGGGGAAATCACCTCTTAAAATAGCCACAACAGAAGGAAGAATGCACAAGTACTGGATTCATTTACAACAAAAAGTTAGAATATACACAGTGATGTACCAACGCCCCATCCCAAACCTCACATTTCCTCTGCATTCATCTTCAGTTTCTCCCCTTCCAGTCAGGTGTTGTCATTTACTTTCCTTTTTAGTCGAGTTTAATCACTCTATGGTATGTGATTTCTACTTGAAAACTTTTGTGATTGGATGAACCAATGAAGCATAAGTCAGAAAGAAAGGGGGAAGCCAAGTTGCCAAGGGCAGAGAAGTGAGGATGGAGTGGTGACGGCAGCGGTCAGTGTCCCTTGACCTGTGACGAGTAGAAGGTGATGGCGCACCTGCCTCTTCCCCACAGGAGGCTGGGCGTGGCGGAGAGCAGGTTGTGTTTAGGGAAGGGACTCAGAGCAGGCTGCCCGCGCCTGATTCCCCTGAGTGCAGGGACACGGCTCTGCCTGAAACATGTGAAAACTCTTCTCCATGTGACCTGTTGAGCAGGCGTGGTCTACACAGAAGGTCCTTCCAACCGTGTGGTTTTTTGAAAGGGGAAATTCAGTGTTACCTTTGGGACCACTGTGGGGTTGGTGGTCTTTGGCCAGGAGGATTCTGCACTGTCCATCCTCAGGAAATGCTGATTGAAAGCCTTCTGATGCCCAGAGGTGCTGGCTGTGTGGGAGCTGCACGGGGCCAGGCCATCCCTCTGCTGCTGCAGGCCCCGCCTACCCTCTTGAGCAGCAGCCCAGCTCAGCCGTGTTCCCCACTGTTTCATCCTCAGAGCCCTTCCTGTTGCCCCAGGAAGGGTTTATCGTAAAATCTTACTGTGGCCCAGAAAACCTCTGTGCCTGGCCACCGGTCACCTTCCCAGCTTCGCCCCACTCCCTGCGCTAAAGTGGACCCGCTCATTGTTCCTTGACAAGCTCCATGCTGCTGCACAGATGTCTTTTTCTCCTGCTTCCCTTCCTGGCCAGCTCCAGGCACTCCTCCAGCCATGTTTGTGGACCAGCTAGGTGATGAGGGCACACGTCACTTGGGGTCTTCTTCTTTCTTCCTTGTCTGATTCTCCAGTAGACCCTAAAGCCCTGGTGATGGCGGGAGTCGAAGCACAGAGGGCCCGATGGCCTGGCTGTGGCAGTGGGGGTGCAGGCAGGGGGTCAAGGAGTGGAATTCAAGAGTGTCTTTGCTTTTTTGCCTGTCCGGGGAACGATGAGTTCTTAATATTTTACTTCTTAAATATCCTGTTTTTCTTTATTAAGAAGACAGCCAGGCCGGATGCAGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATAGCGCCGCTGCAGTCAGGCGTGGGAGAAAGAGCAAGACTCCGTCTCGGAAAAAAAAAAAAAAAAAAAAAAAGACAGCCTAGGCCGGTAGGCCGGACACGGTGGCTCACACCCATATTCCCAGCACTTTGGAAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGATGGCGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCTGGGCGCAGTGGCAGGCATCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGCGGCAGAGGTTGCAGTGAGCAAAGATTGCGCCATTGCACTCGAGACTGGGTGACAGAGCAAGACTGTCTCAAAGAAAAAAAAGAAGATAGCATAGGTGCGAGCATGACCCAGGCTTCTGGTGTCAGTGGACTAGATGAACTGGTGGTTCTTACAGTCAGGGGGTCCACAGGGCACACGTAGAGGAGCACGCACTGGGACAGAAGGCAGGGACGTCCATCCACGCGGCCTTCACTCAGGCTGCCGGCACCACCGGGCTTCTCACAGCGCCGGGCTTGTGTGCCAGGGTCGCAGTGGCCTGAGAGTGAGGCATCACAGCAGGTGACACGGTTGCAGCCCTGGCATGCAAGTGTATAAGGCTCACGGGCTGATGCTCCCTGAAGGCAAACCTTCTGATTTGGATTGTTGATGTGGAGTGCAGTCTGTCTCTTCAGCTCTGTGTCGGAGTCTTTTTTCTGTACAATTCCATACCTGCACTTGAGATTTATTTTTTATAGAAACTGCAGTGACTGAGTGTAGACCGTTCTTCAAGGATGAAATCACGTTTGCTGCGTTTTAGAGAACACTTGATGTGACTCTGCGTTCTGCTTTGAAATGGTGCCATTGATACAGATGAAGTGCCTGTTTTAAAAATAGCCCGAGTTCCCTTGCTGCTCATGGAGACGCCTTTTATTTAGTCGTGCTGGTCTGTGCATGCGGTGCACGCATGTTGTGTGTTCCTGACTCGGGGGCCCCTGCTGTGTGGGGGAGTCCTTGCTGGAGACTCCCCGTTCTGTGCTTGAGGTCAGGCGTGCCCTTGCGTAGCACAATCGCGGGGAGGGGTGGCTCGGTGCCATCCCCCTCTTAACCTCGGGGGCCTGAGGCTCAGCGTGAGGCGCAGCTTGTCTTGGGCCACCCTGCCTGGGACTCATGCTTCATTTCGGGGTTTGCTAAGTTACAAAGGGCGTCTCTCAGACCTCTGTTGATCAGGTTTTCATTAACTTTCCCCTGCCACTCGCGAGCACCCCTGCCAGCTCAGTGTGCGTGTTAGAAGGTGGAGATGCGAGAGGCTTCCGGTGCTCACTAGAGGAGCCGTGTATTTGGATGTTCAGTGTCGTCAGTGGTATTGTCCCCCAGCAAATAGACTTGGTGAGCTAATTAAATATCCTTCTGAACATGTATGATTGTGTAAAATAAAGGGACAGTGACAGTGTCAGTTTAAAGGGACAGTGACAGTGGAAAGAGGTGTTCTTTAGAGAAATTATCCTTACTTTTTAGAGGTTAACTAATATCATGTTTCTTGGAAAGAACAGGAAGAATAACACTGCTTTTACGCCCAAAAAGCCACCCAGACCTGTCATGTTTGTGTCTTTGTGGTTAATAACAGCCAGCAAAGGTGCTGAAACCTAGATGTTTAAAAATAGACTTCCAAAAGGAGAAGTGAATTCAGGGGGCCCTGGGGCCCGCCCCTCGAGCACCCGGTGTGGCCCTCAGCTTGTGAGGTGGCTCAGTCATTCCACAGCTGCATTGAGCACTGAACTCTCCAGCCATCACAAGCTGCTTGAAAATGCACATCATTTTTTGAAGTGAAAACCCTTTAAGTCCCTGGCTTCATCTCACAGGTGGACACTCCAGCCCCTTAACACAGACTGGGCCACCAGGGCGGAGTACAGCTCCCACCCCTCCAGGTAGTGACAAATATGAGCAGCCTGTGTGTTTTGGGAAAGGGCTTTCTGAATTAGTTAAATGAAGTAGCATAAAGTCAGGCCTGGTTACTGGCAGCCTCGTGTGTTCGTGGCAGGGTTTCTGCGTTCCTGCCTCCCTCGCTGGGGCCTGGCAGCCTGAGTGTGGAGCTGGAGGGGGAAGACCCCTGCGTCTGCAGCATCGGCCCACTGGGTTTCACCTAGGGCCTGAGGACATGCCTTGGGGCCCTTTCCTGCCACCATCCAGGTGGGAGGGGTCTGAGGAGTGGGAGTCTTCTCCTGGGACCCTGGGGTCGTTCTGGGGAACCCCCTGCAGCCACAGAGACAGGACTGTGCTTCTGCCCCAGACCCAGCAGCAGGGTAGGAGGCCTTTAGACGTTCCAAGGGAAGATGAGGCCACATGGGCATGATTCTGGCATCCTAAACCTGAGACCCTGTGGCAGCCATGCAGGGCCACCTGTCCCGTGGGACCTGCACTTACAGGGGTGAGGCCTCTCTGGGAAGCAGGGACCCTCTGTATTATGGCCCCCGAGGTATACGAGGGCTGCAGAGGAGATGTCCATGGGAGCCTTGTGGCCCCGCACAGGTGCTGTGGCCTGGGAGAAGAGCTGGGAGGGACACATGGGAGTGTGAGGGTGAGGTCGGATCCTGGTATCTGAACAGGAGAGCTGGTGGGGTTGGCTGATGCCAGGGTGTGGGTGTGTGAGAAACAGGCGGGCAGGCGGCACCAGTGCCACTGTGAAACAGGGAAGCCTGCTGTGGGCAGCAGAAGCATGAGCTGCTGCCTGCCCCAGAGACAGTGGAGACCTCTCCCCTGGTCTTCTGAACACTTGCCACCTGTCACTTTGCTTTCCTGATGGCTCTCTGTTGACAAAGCAAGCTGACTTAGTGGAGCCTCCTGTTGTTTTCTTCCATGTGGCTTCATGTCACCTCGAGTGCTCCCTGCCGGCACAAGCACTTGATCCCAGGGAGCTCCCAGGAGGCCTGATGCAGAGCCCCACTCCTGGAGTCAGAGCCGCGGGTGGCAGGCCTCATACAGGGGCCTCTGACTGTTCTGCTCCTAGCCTGTCTGTATTTGATGGAAGGTGGTGCAGCATTTTCCGAGTCCTAACTGTGTTTTGCTTTTTAACACCTTTGGTTTGGAAG
Seq C2 exon
CGAGTGATAGACAGCCAAGCAGAGAAACTGAAGGAGCTTGACAAGGAGATCCGGCCCTTCCGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGCGTGGAGTCCCTCCAGAACCGCGTGACCGAGCTGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323-TRAF3:NM_145725:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF086146=ATG16=FE(34.1=100),PF127182=Tropomyosin_1=FE(31.5=100),PF0149614=V_ATPase_I=FE(25.1=100),PF0205011=FliJ=FE(46.5=100),PF101744=Cast=FE(29.9=100),PF100464=BLOC1_2=PU(42.9=83.0),PF138511=GAS=PU(32.5=80.9)
A:
NA
C2:
PF086146=ATG16=PD(18.5=42.4),PF127182=Tropomyosin_1=FE(39.7=100),PF0149614=V_ATPase_I=FE(31.7=100),PF0205011=FliJ=PD(45.5=76.3),PF101744=Cast=FE(37.7=100),PF100464=BLOC1_2=PD(54.9=84.7),PF138511=GAS=FE(49.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)