HsaINT0171690 @ hg38
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102903255-102911500:+
Coord C1 exon
chr14:102903255-102903429
Coord A exon
chr14:102903430-102905212
Coord C2 exon
chr14:102905213-102911500
Length
1783 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCTCCTCACCTGTGGCAGGCC
3' ss Score
6.14
Exon sequences
Seq C1 exon
CGAGTGATAGACAGCCAAGCAGAGAAACTGAAGGAGCTTGACAAGGAGATCCGGCCCTTCCGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGCGTGGAGTCCCTCCAGAACCGCGTGACCGAGCTGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAACACAG
Seq A exon
GTGAGGCAGGGGCCGGGGCCGGGCCAGCAGTGTGCATCTGGGCCCCGGGCGAGTGCTGGGGCGGGGTCCGTGGGATGAGGGCTATGTTAGGTACATGTGCCTTAGGACAGTTTTTTCTAATTATGGGTAACACGCAGAGGTGTGATGACTTTCCTACTGAAAGTCCCCCAGCAAAGACAAACGTTTCCCGCGCAGGCTTGTCCCCTCCGTGTGAGGCCCTACATGGTGTAGAAAGTAGGGGCAGCTGCAGCCACGGGAAGCTGCAAAGCCCTCCTGGGAGAGACTGGCCGCAGGGTGACCCACAGGACAGGCCCAAGCGCAGATGGCAGAGGCCAGGACCTGCTGGTCGGGGCGCCCCAGACCCCACTCCTAAGGGCCAGGGGGCAGCAGTCCCACCGCGCTCTGCCAGCATGTTTCTGATCCACAAGCAGATGTGGGCCTATGGCTTTGGGGACTGAAAGAGTATTGGGAATATTTACATGAGGAGGATTAATGGCAGAAAGGAACACAGATTACCGGTGTGTGTGTGGGGCCGGATGAAGCAGGCAGAGAATGAGGTTGGAGGAGAGGGGAGCAGCTTCGCCTCCAAGAGAGCAGAGGCCACCTGTGGGTGCTGAGGCCGGAGGGAGGAGTGGGGAGAGCACAGCTGTCTCCTGCTCCCAGGAGCTCCCACCAGCGGGCTTCCCAGGAAGCCACAGTGGAGCACTCTGTCTTGGACCCTGCAGTGAGGTGTCCTTTGACACACAGGCAGGTCAACCGCCCAGGACATCCCCTGTCAGCAGTCTGTGCCTAGTAATGTGTCCAGACAGACAGGGCTGTGGGCATGAGAGCTGTGGTAGAACTGGGGCAGGGACCTGGGCTCTTCCCTGGGAGGCGGTGGCCTCAGGACATCTTCTACACAGTTTTGCTGGTGTTACCCCCAGAAACCACAGTGATTTTTATATTGTTGCTTCAGATGCTGGTATGACTGGGCATGGTGGTGTGGCCTATAGTCCCAGTGCTTTGGGAGGCTGAGGCAGGAGGATTACTTAAGCTCAGGAGTTTGATGCCAGCCTGAGCAACAGAGCAAGACCTTGCCTCTTTAAAAATTAAAAAATGAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACGAGGTCAGGAGATTGAGATCATCCTGGCTAACACGGTGAAACCCCATCTCTAGTAAAAATACAAAAAGTTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAGAGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGATCGAGGCAGGTGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCCCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCAGGCACCTCTAATCCCAGCTGCTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTCAGCTGAGATGGTGCCACTGCACTCCAGTCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAATGAAATAAAATAACGAGTGCTGGTGCAGCTTTGCTTTCCTAACCTCTCTGACGTTCACCTGTCTCATTCACCAAACCCTCCTCACCTGTGGCAG
Seq C2 exon
GCCTGCTGGAGTCCCAGCTGAGCCGGCATGACCAGATGCTGAGTGTGCACGACATCCGCCTAGCCGACATGGACCTGCGCTTCCAGGTCCTGGAGACCGCCAGCTACAATGGAGTGCTCATCTGGAAGATTCGCGACTACAAGCGGCGGAAGCAGGAGGCCGTCATGGGGAAGACCCTGTCCCTTTACAGCCAGCCTTTCTACACTGGTTACTTTGGCTATAAGATGTGTGCCAGGGTCTACCTGAACGGGGACGGGATGGGGAAGGGGACGCACTTGTCGCTGTTTTTTGTCATCATGCGTGGAGAATATGATGCCCTGCTTCCTTGGCCGTTTAAGCAGAAAGTGACACTCATGCTGATGGATCAGGGGTCCTCTCGACGTCATTTGGGAGATGCATTCAAGCCCGACCCCAACAGCAGCAGCTTCAAGAAGCCCACTGGAGAGATGAATATCGCCTCTGGCTGCCCAGTCTTTGTGGCCCAAACTGTTCTAGAAAATGGGACATATATTAAAGATGATACAATTTTTATTAAAGTCATAGTGGATACTTCGGATCTGCCCGATCCCTGATAAGTAGCTGGGGAGGTGGATTTAGCAGAAGGCAACTCCTCTGGGGGATTTGAACCGGTCTGTCTTCACTGAGGTCCTCGCGCTCAGAAAAGGACCTTGTGAGACGGAGGAAGCGGCAGAAGGCGGACGCGTGCCGGCGGGAGGAGCCACGCGTGAGCACACCTGACACGTTTTATAATAGACTAGCCACACTTCACTCTGAAGAATTATTTATCCTTCAACAAGATAAATATTGCTGTCAGAGAAGGTTTTCATTTTCATTTTTAAAGATCTAGTTAATTAAGGTGGAAAACATATATGCTAAACAAAAGAAACATGATTTTTCTTCCTTAAACTTGAACACCAAAAAAACACACACACACACACACGTGGGGATAGCTGGACATGTCAGCATGTTAAGTAAAAGGAGAATTTATGAAATAGTAATGCAATTCTGATATCTTCTTTCTAAAATTCAAGAGTGCAATTTTGTTTCAAATACAGTATATTGTCTATTTTTAAGGCCTCATCTGGTCTCTGTTTTAATAATTTGTTTGTCAGAAGACCCTGAAGTATATACCTAGGTCTTTTTTTTGAAAGTCTCTAAATTCAGAATCATTTTTTAATTTAAAGTTCTACAAATAATTGTTACTGCAAACATTTTATTTTAAAACGTTGATAGACTGATATTTCTTGGAAGAAAATATAAAATATCAAACACTGGTTATCACTTGTGATAGGAAAGAGAATATTCAACCTGTTGTTATTTCTCGTTAGAAATGTAAACCTTCAAATATCTGTCGTAGTTAATGACACGACTTCACAATTCTGAACGGAGCCTCGCTCATGGATGCTGTGCATCATTTTCAGATTTATAATTGTTTTCACCCTAAAATAGGGCATCCGTTGAACTTTGGAGTTCTAAACAAAATCCTGTAGGTGTTTGGATTCTGCCCCATGTGTTCGGACGAGCTCTCTGTTGCTGACAGCACCGGCCTTCGGTCTCCATGTCAGGGGTGGGCGGGTGACTGCTGAGGGAGGCCCGCAGGTGTGTTTCTCCATCCCGTCATCTTGCTGCATGCCGTCAACGGTCTCCGAAAGCAACGTTGTGCGTAGAGCTGGTGGCATACGGCCCACGTGCCTTAGATGGGACATGCTGCTTCTCCACCCTGGGTTTGCATTGAGCATCATTCTAGAAAGTGCTAGTTTAACCAGACTTTTCTCTCCACCACTAGATCTTTGTCTCTACAAGGGCCCTCAGACACCTCTGCACCTGCTGAGGGGAAGCCAGGCTCCACCGTCGGCTTCTGGAGCCTCCGCTGCTTAATTACCACAGATTCCAAATCTCTAGGCCCCACGAGTGAGCCGCCTGGTCCAAGTACGGCCTGGTCCCACCCTGAGGGAGGCAGGTGTGGAACAGAAGCCGAGCCTCTCCGTGTCCCCACCGGGGCCGTGGGCACCCCCACAGCCCGAAGCAGAACCCTCTGAGCATTCCAGAGACCGCTGCTCGGGGGCCTGCCCAGGCTGACCAACGGGCGCTCCTGACCACCACCCTGGCGGGAAGGGTGGCCACGGGGCCCGTCGTCCCAGCCTGTGCCTGCCCAGATGGCATTTTCTCAACTCACTGTTTACTGTCTCTCAGTGTCCAACTGTGATTAGAAGCCTGGAGCCTGCCCCCTGCACCCCTTTTGCTATGCACCACGCTTCATGGTGCTCTTACCACTGATGGGTGCTACACGCGACGGGTGCTTCTTAGGCAAAACCAATGTGTGCGAACTGTCACACCTGTGCCACTCGCCCACAAGCCGCGCCCACAATTGGCCAGCTGGGCCGTGCACGTCAGACTGCCTGCCTCGGCTCTCCCCGTGGCCGCGCGGGGACAGCTTGGTGGGTGCCCGGTGGCCCACCTGTCTCTGGTGCTGCCATCTGTCCTGGGTGTGCCTTCGCCCCAGTGCCTGCTGGAAGTGCCCTCCGTCGCACCCCTGTGCCCTGAGCTCCCGTGAGGGGCCCGCCGCGCCCTTTCGCGGTCGAAGCGTTCCGTTGTTCTTATCTGCCTTTCCTTTCCCCGCTCTCCTGGGATTACTTTGGGGGAATGAGTATCCTTGGTTCTGCCCTGTGAGGGAGTCGTGTGTCCCTGCTCATAAAGGAAGGACTTCCTGCAGAAGCTGCGGAAAACTACTGTTCCCTCGAAGGTGTCCCCCACCTGAGGCCTGTCCCCTACCTGCCCTCAGGTAGTTTTCCTGAGGCCAGGGGTTAACAACAGGGACATCCCTGCAACTTCCCCTTCACAAAATGTATAATATTAGATGAAGGATATGCAACATCTTGGTCTAGTAAGAACCGTTTCCTCCCCTCTGGGTTGAAGTCCTGGTGTGGCCCCCAGAAGCAGCAGTGCGTGTCACTGGGACGTCTCCAGTAGCCCTTCCCAGGCAGACGCTCCTGGCGGGACGCCATGGGGCCCACCTGAGGGTCCCACAGACGTAACCTGAGTGACAGGAGTCCTTGAGGATGGGATGGCCTATGTCACACACTTTGTCCTTGAACCTGAGTGATGGGGGTCCTTGAGGATGGGATGGCCTGTGTCACGCGCTTTGTCTTTGTGTTTGGTTGTATCGGGGTCTCTGTTCTGAGTGTGTCTTCCTCTCATGTACTCAACACAGTGGGCAGCAGCCTGGGACGGCGTCCCCTCTCCCGGCGGCGGGCAAGCCTTGCGCTGCTCCACCCTCGGCCTGGGCACCCTCACTTGGCGCTGGCCACCTGGGCCAGCCTGGGGCCATGGTCTCTCTGCAGCTGAGGCCCAGTGGCCCCTTGGGCAGTGATCGGCCCTCCCCGCATCACAGGGCCCTGGCAGCAAGCGGGAAATGGGGGCGCACACTGTGTGCTTGGGGGTGCTGCTTGTTTACCACACATGACCAGACTCCCAGCAGGACAGAGCTGCTCAGTACTTTACAGAAACCAACTGAGTCGTTTGTGCATGAATTAAGCCGGTCTGCTTCCCCGTCACCTTCGTAACAAAACAACGTCCCCTCTCCCCTCGCCTCGAGCAGTTTCTTCAGGACACCGTGGCTCGGGCTGCTCCCTGCTGCCAGGCACGCTGGTTGGCTGGCCTGGGCCCGGCTCACGTGAAGGGCACTGGCTCTTGTGACCACACTGAGCCACGTGCAAGCCGCAGCCGGGCCTGGAAGCCTGACCCTCTGGTTCTAGGGCTTGTCCCGCGGAGCCTGCAGAGCTAGACGTTGGGGTGTGTCCGTGATGATATGGGGGCCAGGCTGGGAGTAGGGCCTTTCTAGCAGGGTTGGGTGGCTCAGTGAGGGTGTGGAAGTGGGGGACCCACGGGGCCTGGCTTTGGGACTAGACATGCCAGCCCCAGCTGGGCTGGAGGGAGCCTGAGTGAGCCCCGACATACGCTGGGCCTTTCAGCTCGCCGTGCTCTGGTGACACACAGGCGGCCAGGTTGGGATTTGTGTCAATTCTAGGAGCCATCAAGCATGAATGTGGTTCTGTCTCCTGAGCGCAAGCCTCGCCGGACCCCTGGGCGAAGGCCTGGACTTGCAGATGTGTGTTCCCTGTGCGGGTGGACAGAGGGGGCCCTTATGACCCACATTGCAGCCCCATTCCACCACCCCTTCCTCCCCAGAGCAGTCTCTGCCGAGGGACAGCACCTGTGTCCCTTCGATGCCACAACAGCCAGTTGAACAGGGGAGCCCTTTGCTCAGGCAGCTTCTCCTGCCTCTCCCTCCTTTCTCCTTCCCTGCCCCATCCCCGTGCCCTTCTTGGCCTGTGGCGCTGGGGAGCCATGGTGTGGCATACTGGGGCTCCTGCTCCTTGGGCCACTTCCTCAGCCCGGGCCCCACAGGCCCACCACCTGCCAGGGCTCCCACTGCACTGGCTGTGGCAGGAGGCTTCCCCATGACCCCGTGTGGCCCAGCTCGGTGAGGATGCAGTTCTAGGCACAGCCCCTGGGACAGCCAGCTGCCTCCCAGACCACGTCAGCCTGCTCCAGGGTCCTCAGTCACCCTGGGCCAGGGGCCACGTGTCCCATGGATGTCGACCATGCCAACGTCACATTCCAGCACCCCTTTTGCTTGATGGCGTCTGGTGGTAGTCAGCATGGTGGACCCACATCCTACAGCCAGAGGTGATGTTGGACAAAGGAAGGGGAGTCTGGATGGGTCCTTAAACGACCATTCTGTCCGCAGCGGGGTCATTCCTTGTCAGCCCAAGGGAGGGCCGGGGAGTACACTGATCCCAACAGCTGGGCTGACACCTCCTTTCTCCCCTGCACGGGGAGGATTGGCCTGAGGACCGTCACCCTGTGCACAGCCCCAGTAGGGTGGCAGTGCCACTGTCTCCTTGGGCCGTTGCAGGATTGGGCGGGTGCAGACTCCCCTTGCGGGCCCCTTGCTCAATCCCCGGCCCTCCCAGACTCCTCCCTCTACTGGGGGTAATTTGTGTGTCAGAAGGGCTCTGGCAGAGCTGTAAAATACTGTTTTTTAAAAATTTTAGTCCAGATCTTTACTTATTAGACTGCAGAAGGAGAGCTAGGGAGAGTGGGGGAAGCCCCCTTGCTTTTGTATCTGTGAGGTGAATGAGGGTCTGTCACCCAAATCTACTTCTCAGCCCATGACCATAGTTCTGTTTTCCGTTTGCAAATCTCAGTAGCTCTGTTTTCTCCAAAGTAGAATGTGCGCACCGGGGTCCTAGCCAGGCGAGGTCAGTGTCGGCAGGCTACCTGGTCATTATTGCTGCCTCGTCCAGGCTGATGCTGATGGTCACAGGCACGGTGGCATCAGGGAGCCGGGCCAGCAGGCGGCGTGAGGCGGGGCCAGCAGCTCACTGCAAGGGCATTTTCCACCTGATCCTGGTGTGCCCCACATGCGGTGGCAGGGCAGACGTGTGAAGCCTCGGCCGTCTCGGGGCTGGCAGGTGTGCGGGTGAGGAGGCCCCGGTGGCCAAGCAGAGCCTGCGTTTCATTTCTCCTGCTGCACTGTGTCTAGTCTGTCTTGTGAACTCTCACCGTGAAAAGAGGCTAGAAGTCCAGGATCGCTGTACCGCTCCTGTAATTAGGTGATGACTGGATTTGACAACTTAGTCCCCTCAGACAAGTAAGATACCCTCCAACAGCAAATTCAATGACTTAATTGGAAAACACACAAGCTGGCATGATGTCCGGTGATTTCTGTAAGAAATGCCTGTAGGAGAAGGTCTGTGAAGTGTGGAGGGCAGTGTCGACGCTGCACAGCATCTGCAGATTCGCAGCCTCTTCTCTGCCGGTGCCTCTGTTCGGTTCTGTTACCCAAAAACAAAGACCAAAGAAGGCCAATCTCTCATTTGACCCTGTCTTTTTAATCTGCCTGTTTTAAAAGTTGCGTCTGTAGTAGCCGCTTGCTGTGAAGACACATCTTGACAGTCCAAGTGATTTTGTGACCAGTGATTTGGGTCCTGTTTTCCGCTCTTCTAAGAAAAAACAAAAAGACCGTGAGTTATTGCCCAGCAATAATCATGTTGTTACTGTGAGTTAGCAACATGCCTGACTTCCTGATAGCATTACTGTTTTCTAGTTTTGTTTATTGTATATTATGTGTGGTTTTATTTGGTATTTATTTGTGTTTTGAGGTCTTGCAATGTTTTTGTGTTTCTGATGCTAATAACTAAAGTTTGTAAGACTGTAGAATGCAAAACTCGGAGATGCTAAACTGTCTTATTAGAGGAAAATAAATCTGATTATGGAGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323:ENST00000560371:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF086146=ATG16=PD(18.5=42.4),PF101744=Cast=FE(37.7=100),PF0149614=V_ATPase_I=FE(31.7=100),PF0205011=FliJ=PD(45.5=76.3),PF138511=GAS=FE(49.6=100)
A:
NA
C2:
PF101744=Cast=PD(9.1=16.7),PF0149614=V_ATPase_I=PD(33.9=73.8),PF138511=GAS=PD(16.2=22.6),PF0091721=MATH=WD(100=48.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGACAAGGAGATCCGG
R:
CCAGTGTAGAAAGGCTGGCTG
Band lengths:
350-2133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains