HsaINT0171759 @ hg19
Intron Retention
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211519706-211526799:+
Coord C1 exon
chr1:211519706-211519764
Coord A exon
chr1:211519765-211526580
Coord C2 exon
chr1:211526581-211526799
Length
6816 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTCCCCTGACCTCTGCAGAAT
3' ss Score
8.76
Exon sequences
Seq C1 exon
AGTGCAGGGATGTGCAGATGAGTGGGCTGTGGGGTGTCCTGCTCACGGTTTCATGGATG
Seq A exon
GTGAGTGGCAGAGCAGAGACAGAGGTCTCTGGTCCTGTGCCCTTTTCACTCTGGGATTTTATCTGTAGTAATCAGTAATTCCCCAAGAATCAGAACTTGAAAACCCTGAAGACAAATTTTGTGGACTTATGTCTTATGCACTATAACATAATATATTTAAAAATTCCCCAGTTTTTCAAATCTTCATTAATCCAAACTGGATGTTGGCAGGGGTATGGAGGTGGTATGGATAGACAGAGCAGGATCTACCTTTCTTTGTTAAACCTTAAACTCTGCAAAATACATATCTTTTTTGTTATAACTGAAGGCTAAGCTCACGTTGCTTCAGAATGTGAGAATATTTGTCATATGTTCTCCAGAAATGAATCCGTAGAGATACGTAAGTAAAGAATGTAAATGGTGGCATCCACAGCTTTCCTTTGGAATTCCTAAAAAATTCTCATGGAAAAGATGCATCAATTTATGAAACAAGAAGATGGCATTTCAAAGAAACTCAACAAGAGTTCTTAGGGAATAGATGGGATGTGACTTTCTTTTGTCTCTTTTGGCTTGAGTTAACAACTCTTCAGTAGGAGTACCACACTGTACATCCCATTGATGGCAAGAATACGAATGCCATTGACTGCAGAAAGGTGATATATAAGCTCTATTTTTAGCAGTTTTGATATGTTTTTTTTTTCCTGACTTGCAAGAACTGAGCTGCTTTGTTGTTCCTGTTACGTAAGCTGTTATACACAGAGGGGAAAGATTTTAATAAAATGGAGTGCTTACTCATTTCCACTAAATAGCTGCCTGGGAATGACAGAATACCAGCTGAAAGTATCTAATTAATTAGATAAATATATTTGTTAGGTAAAGAAGCATAGCCTTTCTAGTTCTGCTGTTGGGCTCTCTCATGTCAGTGAACAAAGTGGGTCCAGGCTTGAGGAAGCTTCAGAAGGAGACGGATCCTGCCCTGGGAGGCATCACAGCTCTGTTTATATACTAGAACCTCACCCAGAAAGACACCTCAAGTCCACATCTCATGGCCGAACATAAATGCTTATTTTTCTACAATGTGTTATGAGATTAAAAACCCAATTTCATAAAAACAAATAGTGGACAAGACAATAACCGATTAGAGAGTGAACAAGGTCAGTGAATGACTTAGGCCTGTTGAATAGGTCTGGGAAATACACACATGGATGGGGAGAGGAAGGATGGGGCATTCAGTCCTCTGCTGGCTGTTCAGCAGGAGCAAGGAGACTGTGAGAGTCACATGTGCTGTGTCTGCCAGGACAAAGCTGACAAGACATGGGCCCACACAGCCATCTAATAGAGCAGTGGTTTCCAAAGTGTGCTTCAAGGGCCCCTGGGGTGCTGGAGCAGCTCTTACTAGGAAGTCACTTAATGGACTCTTACTTCAGGTGAGTTCAGGTAAGAGCCAATTGTGTGCATCTCTTTCCCAGTTCCAGTTCAGTGACCTTTTTCATTGTTACCTTGAAATTAGCCATAGTGGAAGTGTTTAACCACAGAAATCGGCAAATGCTACAAGCTGGAGCTTTCCCCCAGTTGAGCAGATTATTAAATGTTTACTAGCACAGCACTGCTTGGGGCTCCCTGACACACTTTCAGGGGATCTGCATGGTCAAAACTATTTTCATAATAGTACTGACATCGTTTGCCATTTGTACTCTCCTTTTACAAATGCACAGAGATGTTTCCCTGAAGCTAAATGATATATGATATGCAACAGACTGAATGTAGGAGCAGACATGAGAATCCAGCTATCTTCTATTAAGCAACACATTAAAGAGATGTGCAAACATGTAAAATGGTGGCACTCTTCTCACTAATTCTTTTGTTTTGGAAAATGGTTATTTTTCATAAAAATATTTGTATTAACATATAATTGGCTTATTATCTTGAAGTAAATACTTTTAAAATTCCTCAATTTGACTCTCAAGTATGGTAAATATGAATAGATATAATTTGCGTAAACAAAAACTCTTAGGGGTCCTCCATTAAAAAAAGACAAGATTTTCTTTTAGAGCAGTTTTAGGTTCACAGCAAAATTGAATGGAAGTCTGTTTATCCATTCTTTCTTTCACGGATTGTGCCCTTGGTGTTGTACCTAAAAAGTCATTGTCAAACTCAAGATCCTCTAGATTTTATCCTGTGTTATCTAGTAGGAGTTTTATAGTTTTGCATTTTACATTCATGTCTGTGATCCATTCTGAGTTAATTTTTGTGAAGGGTGTCAGGTCTGTGTCTAGCTTCATTTTCTGTTGTAGATGTCCAGTTGTCCCAGCACCATTTGTTGAAAAGATTATCTTTGCATCATTGTTTTGCCTTTGGCCTTTTGCCAAGGGTCAGTTGACTATATTTATGTGGATCTATTTCTGGGCTCTTTATTCTCTATATTCTTTATAATCAAGTATAATAAGTTTTGAAGTTGGGTAGTGTCCATCCTATGGATCTTTGGCTCCTCAAGTTTTAAGAGTGTTATCTTAGACCAGGTGCTGTGGCTCATACCTATAGTAATCCCATTGCTTTGGGAGGCTGAGCTGAAAGGATTGCTTGTGGCCAGGAGTTCAAGACCAGGCTGGGCAACATAGTGAGACTCTGTCTCTAAAAAAAAAAAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGCACGCACCTGTAGTCCTAACTACTGGGGAGGTTTAGGTGGAAGGATCACTTGAGCCCAGGAGTTGGAGGTTACAGTGAGCCATGGTTACACCACTGCACTCCAGCCTGGGCTACAGAGTGAGACCCTGTCTCTGAAAAGAAAGAAAAAACAAGAGTGTTATCTTAGTCTGTTTGTGTTGCCATCACAAAATACCTCAGACTGGGTAATTTATAAAGAACAAAAATGTATTTCTCACAGTTCTGAAGGCTGAGAAGTCCACAATCAAGACACCAGCAGATTCCGTGTCTGGTGAGGGCTCACTTTCTGCTCCCAAGATGGCAGCTTATTGCTGCATCCTCCAGAGATGAACACTGTCCTTACATGGGGAAAGTTGGAAGGGCAAAATAACCTAGCTAGTTCCTTTGAGCCCATTTTAAGGTCACTGGTCCCATCCGTGGATACAAAGCCCTCATGACTTAATCACCTCCTAAAGGTCCCACCTCTTAATACTATCACACTGGACCTTAGGTTTCAATATACGAATTTTGGGGGGGACACATACATTCAAATCATAGGGGGTCCAGAGACCGAAAAGTTGGAGAACTACTGTTGTAGCAAAAGATGGACATACACACAGATGAGTGCCATAGATTCTTGTGTTAGGGAGAGTGCAGAGTGTAGTGGAGGGAACCTGAACTGAGTTTTGTACATCCTACTGCCTTATTCTGGGGACTGAATGAGCCTGTTGCTTTAGGATACATCTCTGAGAGTCCAAATTTAGATACTGTGTGACAGACTTGGGCCTGGCCTCAGAAGAGAATCTCAGAAGGACATAGAATATGACATCAGGGCACAGGATGCGAAGTGCCAACCTCCGCAGGAATGAGGGAACACAAGGCAGAGCAGGGCAGTTTGAAAGTGGTTCTTCCAGTTCTCTGAGAGAAAGGTGGGGCTTGGTTATTAGGGCTGTGCATGTAAATAAAATGTTTTGCCTCTTCATCTTCAGAATTAAAACTTTTGTTAAATCCCAAGAGTCAACCATGTTACAGGAGGGAACATTTGTATCTTATACTGCTTACCTACCACCCTTGAAGTTTTGCAGGAAACACTAGGGAAAAGGTGGAGCTTTGGTCTCAAACCCCAGGCTTTTTTTTTTTTCTTTCTTTTTTTTTTTTGAGACAGGGTCTCTCGCCCTGTCACCCGGGCTGGAGTGCAGTGGCATAATCATGACTCGCTGTGGCCTCCACCTCCCAGGCTCAAGTGATCCCCCCCTGCCTCAGCCTCCCAGGTAGCTTGTGCGAAGGCCCTGTGGCATAGAGTGTGGTGTATTAGAAGAACAAAAACAAAAACAAAAACAAAAACAAAAACCCTGTGTGGCTGGAGTACGGAAAGCCAGGAAAGAGAGGTCCAGGATGGTGCTGTACTGGGGAGGATACAGTCTTGAGCCTGCTTAGCATTGTGGACTTTCTCTCAGAACCTGGGAAGCCACTAAAAGATGAAGGGAGATAACCTAACATTGTACTTGACATTTTGAAAGTCTCATCCTGGCTATAGTATGGAGAGTAGATTGGAGAAGAAAGCAATTAATGAACTCATATTTAGTTCAGGTGAGAAATGATGTGGCTTGGTACTTGTCTTAGCTTGGGCTGCTATAAGAAAGCACCATAGACTAGGTAGCTTATAAACAACAGAGGTTTCTGACAGTTCTGGAAGCTGAAAGCCCAATATCAGCGTGCCAGTGTGGTTGGGTTCTGATGAGGTCCCTCTTCCGGGCTGCAGACTTAACTGCTGTATCATCACATGGCAGCAAGAGGGCCAGGGACCTCTCTGGCCTCTTTAGAGAGGAGGTCTCGCCATGTTGCCTGGGCTAGACTCGAACTCCTAGGTTCAAGCCATCTTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCACCATTCCCTGCTCTCTCTGTCTCTGGCCTCTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGACACTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAATCTCTGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCTGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGCGTTAGCCAGGATGGTCTCTATCTCCTGACCTCATGATCCGCCTGCCTCAGCCTCCTAAAGTGCTGGGATTATAGGCATGAGCCACTGCGTCCAGCCTTCTCTGGCCTCTTCTTATAAGGGCACTAATCCCATTCATGAGGGCTCCACTCTCATGACTTCATTACCTGCCAAATGCCCACCTCCTAATACTGTCACATGGGGGGTTAGAATTTCCACATATAAATTTTGGGAGGAATACAAACATTCGATCTACCGCAATGGCAGTGATAGATACTGTGAGTAATATATTTGTGTGCAAGGAGTCATTGCCAAACTCAAGATCATCTAGATTTTATCCTATGTTATCTAGTAGGAGTTTTATAGCTTTGCATTTTATGTTTATGTCTGTGATCCATTCTGAGTTCATTTTTGTGAAGGGTGTCAGGTCTGTGTCTAGCTTCGTTTTCTGATGTGATGTCCAGTTGTCCCAGCACCATTTGTTGAAAAGACTTATCTTTGCATAATTGTTTTGCCCTTTCTCCTTTGTCAAAGGTCAGTTGACTGTATTTATGTGGGTCTATTTCTGGGTTGTCTATTCTGTTCCCTGGATCTATTTGTCTGTTCTTTTGATAGTACTACACTGTCTTGATTACTGTAGCTTTATAATAAGTTTTGAAGTTGAGTAGTGTTAGTCCTCCAGCTTTGTTCTTCTCCTTCAATATTGTGTTGCTGTGTTGGGTCCTTGGCTCCACAGGTTTTAACAGTGTTATCTTAGGCCAGGTGTGGTGGCTTACCCAGTACTTTGGGAGGCTGAGCCACAAAGATCACTTGTGTCCAGGAGTTCAAGACCAGGCTGGGCAGCATAGTGAGACCCTGTCTGTGGTAGTCCGTTTTCATGCTGCTGATAAAGACATACCCAAGACTGGGCAATTTATAAAAAAGAGAGGTTTAATGGACTTACAGTTCCATGTGGCTGCAGACGCCTCACAATCATGGCAGAAGGCAAGGAGGAGCAAGTCACGTCTTACATGGATGGCAGTAGGCAAAATGAGAGAGAGCTTGTGCAGGGAAACTCCACCTTATAAAGCCATCAGATCTCATGAGACTTATTCACATGAGAACAGCACAGGAAAGACCATGATTATATTACCTCCCACTGGGTCCCTCCCACAATATGTGGGAATTCAAGAGGAGACTTGGGTGGGGACACAGCCAAACCATGTCACTGTCTCTAAAAAAAAAAAAAAAAAAAAGTTTTTTTTTTTTTTTAATTGGCCTGGTGTGGTGGTGTGTGCCTGTAGTGCCTGTAGTCCCAGCTACTGGGGAGGGATCAGTTGAGCCCAGGAATTGGAGATTACAGTGAGCCATGATCACACCACTGGCCTCCAGCCTGGGCTACAGAGTGAGACCTTGTCTCTGAAAAAAAGAAAAAAAGTATTAGTCTGTTTGTGCTGACGTAACAAAATACCTCAGACTGGGTAGTTTATAAAGAACAGAAATTTATTTCTCATAGTTCTGGAGGCTGGGAAGTCCAAGTTCAAGACACCAGCATGTTCAATGTCTGGTAAACGCTTGCTCTGTGCTTCCAAGATGGTGAGAAATATATTTGTCTGCTTCTAAAAATTTTAACAAAACCTGTGTTTCCATTCTCTCATTGAGTGGAAGAAAAATTCCTAACAGTTTACTTATAATGTAATTAACACACCTGGCTATATTTTGTCCAAGCATATGGCCAAACTGACAGGGTAATTTAGCACCCTGTAAAAGACTGATGGACAAAGAACTGAATCTCGTAGAATCTTGCTAGAAGTCATCTGGTCCAGCCTCTAACCTGAGCACCCCAAAGACATTGCACCTTTGCCGGAGCCCCCTAGTGGCAGGAGGTTGTCACTGTTGTTTCAGAGTCACAACAGAATGACCATGTGAATGATGTACACTAATTATGAGACAAATAACCAAAGCATCTGATGGCTGTGGTTGTTTCAGTGTTTGCACACTTAATTTTCCCTCTCCTCCCCTGACCTCTGCAG
Seq C2 exon
AATGGCTTATTCAGAAGAGCATAAAGGTATGCCCTGTGGTTTCATCCGCCAGAATTCCGGCAACTCCATTTCCTTGGACTTTGAGCCCAGTATAGAGTACCAGTTTGTGGAGCGGTTGGAAGAGCGCTACAAATGTGCCTTCTGCCACTCGGTGCTTCACAACCCCCACCAGACAGGATGTGGGCACCGCTTCTGCCAGCACTGCATCCTGTCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512-TRAF5:NM_145759:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(71.8=38.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)