HsaINT0173466 @ hg38
Intron Retention
Gene
ENSG00000167112 | TRUB2
Description
TruB pseudouridine synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr9:128310887-128311601:-
Coord C1 exon
chr9:128311529-128311601
Coord A exon
chr9:128311024-128311528
Coord C2 exon
chr9:128310887-128311023
Length
505 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GCCCCCTTCCTGATCTGCAGGTA
3' ss Score
9.97
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGTGAT
Seq A exon
GTGAGTAGGGCCCTCAGGGAGGTACTGGGAGAGCAGTAAGTGCCCTTGGCTCCCGTAGGCTCCCCCAAACCTGGGGCAGATTCCATGGATCTTGTTTTTAGAGCCCAGAACCAGACGGGAGCTACCTGTTTCTTTCTTGGCATTAAGAAATGGTTCTGTGTGCCAGGTCTTGGGTTGGCCAACGGGAGGCCAAGAAGAGCAAGAGAACCAAGCTGTCCTGCTGAGAGTATATGATCTAATGGCAAGGAAACCAGGGACCACATCATTGGAGCACAGAGCCCAAGGGCAAGAGCAGCCAAGGAGTTAAGAGCTTGGGCTCTGGAGCCAGCTTGCCTGGGTTTCCTGACTCTACCAGGCACCTGGTGATGAAGGAGGGCAGGAAAGGTGGCTGGAGGAGCCACGGTGGCAGGGCACACAAAGCAAGTGAGGAGCTTCCAGAGAGGCACCTCATGTGGGGGAAAGGGTAGGTGGGCCACCCAGCTGCAGCCCCCTTCCTGATCTGCAG
Seq C2 exon
GTACTCCAACCTCGACCTGAAGACCCAGGAGGCCTATGAGATGGCCGTGAGAGGCCTGATCCGGCCCATGAACAAGTCCCCGATGCTGATAACTGGCATCCGATGCCTCTACTTTGCACCTCCGGAATTCCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167112:ENST00000372890:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=FE(16.0=100)
A:
NA
C2:
PF0150913=TruB_N=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGACCAGAGAGAAGCTG
R:
GGTGCAAAGTAGAGGCATCGG
Band lengths:
191-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains