HsaINT0174073 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130488518-130489391:+
Coord C1 exon
chr9:130488518-130488683
Coord A exon
chr9:130488684-130489248
Coord C2 exon
chr9:130489249-130489391
Length
565 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GTCACCCCCTTTCGTGGCAGCTG
3' ss Score
8.77
Exon sequences
Seq C1 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
Seq A exon
GTAGGTTCCTGCCACGTCAGGAGTGTAGGCTCCGGAGTCATGCCCGGTGCATAAAGATACTCCTCGGCCCCCAAAGAAATCTGGTTTGATAACAATCATAAGGCCAGGCATGGTGGGTCATGCCTGTAATCCCAGCACTTTGGGAGCCCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCCACCGGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAGCAGCCAGGCATGGTGGTGCACGGTTATAATTCCAGCTACTCAGGAGGCTGAGGCATGAGAATCGCTTCGACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGTTTGTGCCACTGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAAGCAAACAAAAAACATTGCAAAACTCTTCCTTCTTCAGCCCTGGGAAGGGCCAAATCTGGCTGTGCAGGGTCAGGGCAGCATCGTGCTGTCTGTCTGCTGCTCTGGCCCTCACCTGGCTCTGGTCACCCCCTTTCGTGGCAG
Seq C2 exon
CTGTCCCTGCTGATGACCAACCTCTTCCCGGGCATGTCGGTGGAGGAGGTGCTTAGCACCCAGATAGCCCACCTGGCCAGGCTGCAGCTGGAGCAGATGGTGGAGGGCAGCCTGCAGGCCGGCAGCCCACAAGGCATTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(78.5=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCCAGAAGGCAGAGAA
R:
GGCTGCCCTCCACCATCT
Band lengths:
278-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)