HsaINT0174077 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130479123-130479703:+
Coord C1 exon
chr9:130479123-130479295
Coord A exon
chr9:130479296-130479612
Coord C2 exon
chr9:130479613-130479703
Length
317 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TGTCCCCACTTTCCCCACAGCTA
3' ss Score
11.98
Exon sequences
Seq C1 exon
GATGCCCTGAAGGTTGACCAGGGCCCCTCACGGGACATCCCAAAGCCATGGGTGATTCCAGCCCCCAAAGGGATCCTGCAGCACATCTTTGGGACCAGCCACGTGTTCCAAAGCATCTGTGATGTAAAACCAAAGGTCACAGGGTTAACAGTGCCCCTCAAAGTCAGGGAATA
Seq A exon
GTGAGTGACTACCTTGCTTTGGGGTCCCAGGTTCCTGCCCGACACAGCCATTCACATGCTGTGCAGCTTTGAGCCACTTACTCTCTTCAGGCCTCAGTGAACTCAACTGTCTAATGGGGCTCTTCCACCTCAGTGGGAACGAGGCTGATGGCCTGGCTGGACTCCAGGAACACCAGCCTGCCCTCCCTGGGCTTCTGTCTACTCCTCCTGCCTCTCCACCCAGCTCCCTTGCTTCCCACAACCCCCACCCCAGCCCTATGCCCTGGGCTGGTCCACAGTCAGGGCCACCCCTCTGCCTGTCCCCACTTTCCCCACAG
Seq C2 exon
CTACTCCAGAGGCCAGCAGTGCTTGGAGCAGGCAGACTGGGAGACAGCTGTGCTGCTCTTCTCCCGCGCACTCCACCTGGACCCACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(6.0=6.9)
A:
NA
C2:
PF134141=TPR_11=FE(44.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCCTGAAGGTTGACCAG
R:
GCTGTGGGTCCAGGTGGA
Band lengths:
262-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)