HsaINT0178170 @ hg38
Intron Retention
Gene
ENSG00000183696 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr7:48089212-48090364:+
Coord C1 exon
chr7:48089212-48089418
Coord A exon
chr7:48089419-48090249
Coord C2 exon
chr7:48090250-48090364
Length
831 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CGTCTCCTGTCCCAATTCAGGGC
3' ss Score
10.24
Exon sequences
Seq C1 exon
GGCGGGGCCGCTCGCAGACTCCATATGAGATTCACCTCGCAGGTGGTTCCCTCATTCGAGTGCTCCGGCGCACAGACCCGCGCCCCGCCGTCTGCGAGCCTCCCGAGAGCCGTCCCTTCGTCCGGCCCTGGAGCATTGCGTTTGTCGCCGGTGTCGCAGTGCGAGGATGGCGCCGCGGGTGTAGCGGCTCTCTGCGCAGGCCGAGTG
Seq A exon
GTGAGTCGCCCGCGGCCCGGCTCCCGCCGTTCTCTCTTCCCAGGGGTCTAGCCCGTCCCCTGCCTTGGCCACGTGCCCATTTACCTGTAGGGGCGGTGACGGAGGCTCTGGTGCACCTTGGCTGTGAGCTGCAGAGGAGCAGAGAGCGGCCCGGCGCGGCTGCGCGGGGAGGCGGGCGCGCGGCCGGGAGGTTCTGGGGCTGGTGTGTGCGGAGCGAGGTGGGCGTGGGGGAAGCGCGCGGGCGGGATGTGCTTCCTCGGGTCCACCCCGTGCCTACCTCTCCCACGTCCCGGCGACGGAGCGCGCGGGGCTCTGGGCGGGGAGCCCACCGGGCCGAGGCGCAGCGAGGGTGAAGCCAGAGCCGGCAGGGTCAGGTCCCGCAGGGCGCAGGCGGGCGCTTCTCGCAGCCCAAACCCGGGCGGGGAGTGCGGGAACCCCTAGAACTATGCTGGGAGCCCCAGATAAGAGGAAGGAGATGGTGACTTAAGTGACGAAGTGATGTTTTGTCCCCACCGCCTTTTAAAGGGAGAAGGGGGTAAAATTTCATTTGGAGGATGATTGTTACGCGAGCTTTCAGAGTTCAGATGGCGTCAAGTGGCCATCGAGTCAACATTTAACAAAATGTTACCGCATAAAATATTGTCATCGAGTTATCTGGCAGCTCCGCAGAGAAACTTCACAGGCATATGCGTTATATGACATAATTTGCATGGGGAAGGGGGTCCCTTCACGATTCTTTTATATGGCAACCTGTTCTTGGACCTGGCAGGGCCCAGAGAAGCGAGGAACTCCGCAGCTCGTCGACACGTCTCGTCTCCTGTCCCAATTCAG
Seq C2 exon
GGCTTGGTGAGGTGACTCGCGGTCGCGGGTGACTCGCCGGCAGGACACTGCCTGGAACGCCTGGAGCGCCTCCCACTGCAGACGTCTGTCCGCCTCCAGCCGCTCTCCTCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183696:ENST00000331803:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCGCAGACTCCATATGA
R:
CAGAGGAGAGCGGCTGGAG
Band lengths:
312-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains