HsaINT0178175 @ hg19
Intron Retention
Gene
ENSG00000183696 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:12576]
Coordinates
chr7:48142894-48146679:+
Coord C1 exon
chr7:48142894-48143008
Coord A exon
chr7:48143009-48146469
Coord C2 exon
chr7:48146470-48146679
Length
3461 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATGTCTGCTTTTTTCCTCAGGTC
3' ss Score
11.85
Exon sequences
Seq C1 exon
CATGGTATGGGCATTCCTTCTATCTCAATCATGTTGCATGAGCTCATAAAGCTGCTGTACTATGCCCGGTGCTCCAACGTCACTATCATCCGCATTGGCACTTCTGGTGGGATAG
Seq A exon
GTAAGGTCTGCAGAGGGGCCTCTTGCCCTGTGAATGGATGAGGGACTGGGGCATGCCAAGGCAGCTTCTACATGGTGTGGCATTAGAGACAAAGAGTTCCTTTCTTGGCTTTGTTCAAGGGAAGCTTGTTAACAGGAGGTGTGAAAAGAAGCTTGTTTTGTTGTTTTTGTCCAACCTGTTCTCCCAACCCGCACCCCAGAGCTAGGCAGTAGAAGGGCACCACACCATGCATATGGGGGAAACTCATCCTTTTGGGGTTACACAATTTGTGCCTTCTTGTCTGCTTGATTCTGTCTTATTCTTTCTAATCCCCCTTCTTCTCCATTCTCTCCTTTCCTTTGCTTACTTTTCCTCCTCCCTAATCCTGCAGGGATTTTGAAGCACCTTAGGAGAAAAGACACAGGAAAATCAAAGGGGGGAAGAGAGAGGCGCAGTACAAAACTCAGATAAGTGTCCTTAAATTAGCTTAAAATGTCCCTATCCTCAACAGGGACATTTTTTTTTTGTTTAAAAAACAAAGATGGTTGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACATTGGGAGGCCGAGGCGGGCGGATCACAAGATCGGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAGATTAGCTGGGCGTGGTGGTGCACGTCTGTAGTCCCAGCTGCTGGTGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAACATCGCGCCACTGCACTTCAGCCTGGCAACAGAGCGAGACTCCATCTCAACAACAACAACAACAAACAAACAAACAAAAACCCCCACAAACATGGCAAAGAAAGAATGAGATTTAATGAGAAAGCAAAAGCTAACAAATTGTTGAATTGTAAGCCAAAGTCTGTTAGGCAGATTTGTTTTAAATACGTGGTCTTGCTCTCTGGGGTTCCAACTCTGTGCCATTCTTTCTGCTAAAAACTGGGTTCTAGTGATTCCTGCTCCCACCGAGGTGTTCAGAGCTCAGGGAAGAAGCCTGCATGTGCCCTAGAGAAAGTTGAGCTTTGCCGCTGCTGGCCAGGCCTGTGTGTACTTGTTCCAGGCTGTCTAGGGCCTGGACTATCTAGGATTTATAGCAATTCTAGAATTTAAGTGTCCTGACCTTGAAAGGGGACTTGCTTTAGACCCAAATATTTTGAATATGTTATCTTGTCTCTTTTCTTTTTGTTATATAGAGAGATTGATGCATAAAATCTGTGTTTGTATGACTGTAATTCCAAGTTTAGCGAAATTGTCCCTAGGACAACACACCAACGGCCATGAGCTGTCTCGGTCCTGCAAGCTTAGTCTCCGATGCTGCCCACCTGACACAGCTGTGCATAGCATGCTGGCCTCTGCCAGGAACTCTAGTGAATGGTTCTTGAGTTCTTGCTCTGGAGTGATTTTTAAAACAATGATCAGATAATTCTGGAGGGAGTAGTATAGATTTTGAATTTTCCTCAATTGCTCTGTAAAAATGGAAAGAGCAACTAGGGAGCAAAACCAAAAACCACTGGACACAGTTGATAATAAAAGGTGATGTGCTATCCTCACAAACCCCAAAGTATGAATGGGTGGAGACAAAAAGCCTCAGGATCTGGTTGTGTTGGCAGCTGCTCAGGGGGAAGCTCAAGGCGATGGACAGACCTGAGAACAAGAGTCCCAGGCACTCCTAGGAAGGTGCAGGGGGACATGGTGAAGATGGCAGCTGACACTGGAGGGGGCCTGTGCGTCCCAATGTGAGTGATGCTGGAATTCCAAGGGGCTTGACCACTCCAGGCCCTGTGGGTTCACCAAGGCATCAGCCAAGCTCTCCTCTAGCTCCAGCCCCAGTGCTGGGAGAAGCTGCTGAAATGAGACTCTGAATTGCCCAGAACAGCCGCAGGAGTAGCAATGGAAAGAGGAGTTCAGATACATGTGGGGAGCGAAGCAAAGGTCTTTGCAATCGGCCATGTTTTTTAATGTTTCATGAAAACAACTGACTTGGGAGCTCTGGAAAAGATCTGACTTCTTGTTCCCTCCCACATGTTTAGGAAAACCAATTTTGCATTAAAATAAGTATCAGAAATGGATCATAGTTATCTTAGTCCCTGCAGGTTGATAGACAAGATGCCATTGACTGAGTGGCTTATAAACAATAGGAATTTATCGCGTAGTCTGGAGGCTGCGAAGTCCAAGGTCAAGGAGTCAGCAAACTTGGTGTCTGGTGAGGGCTAACTTTCGGATTCATAGAGCTCTGTTTTCTCCCTGTGTGCTCACATGGCAGAAGGGGCAGGCAGCTCTCCGGGGTCCCTCTTATAAGGGCACTAATCCCACTCATGCAGGCTCCACCCTCATGACCTAATCACCTCCCAAAGGCCCTGCTGCCTGAAACCATCACATTTAGGGTTAGGATTTCAGCCTATGAATTTTGAGGGGGAAACCAGCATTCAGTCCAGGTCCATAACAATGGTCAAATCCCATCTAAAATTATTATAACACAAAGAATAAGGGGCAGAGTAATGTCCCTACAAACAGGAAACTACTCCAGGAAGGCACGCCCAGAACATAGAAACTGGACCCTAATAATGCATCAATCTGAGAGGAAGGCCAGGTAGGTCAGGAGTTGGTCATAGCTCACCTGGGTTTAGGGTGTGGGACTTCATTATACTGTTCTAGTCTGCCTTTTGCTGGTTTACTTTTCAAGTATTTGCCTGAAATCTTAAATATTAACAAGGTATGAAACAGGGATCAATGAAACACATCATGGTATATGGTTCAGTGACAGACAACAGTGGGAAATCGCCGTGAATGGAAGCAAGAAATATGGGACAAAGTACTTGAAGGTTCCTGGCCATTTTTATTTTATTCTTTTTTTTTTCTTTCGAAATGGAGTTTGCTCTTTTTGCCCATGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCCGCCTCAGTCTCCCAAGTAGCTGGGATTACAGACACCCGGCACAATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCTCGTCTTGGCCTCCCAAAGTGCTTGGGATTACAGGCGTGGGCCACTGCACCCAGCCCTCTACTTTGTTTTTTGTGCCTTTCTCTTCCATAGTGTCCATAATGATCATGCATTAATTACTTTCATAGCTTAAAAAAAAGTTGAATGGGAAAAATGGGTCACTGTGTATTTGAGAACAGTACTGGATGCTTCGTGTTTGGATGTGTGGGTGGATCTGCTTCTTTCTTCCATATGCTCTGCTGTGTGCTCCCTGGCTGCCCTGCTTTAATTTTATTTTGTTTTACACCCTGCATATCTTGATGTCTGCTTTTTTCCTCAG
Seq C2 exon
GTCTGGAGCCCGGCACTGTGGTCATAACAGAGCAGGCAGTGGATACCTGCTTCAAGGCAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGGAAAACGGACCTTAACAAGAAGCTGGTGCAGGAGCTGTTGCTGTGTTCTGCAGAGCTGAGCGAGTTCACCACAGTGGTGGGGAACACCATGTGCACCTTGGACTTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183696-UPP1:NM_181597:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)