HsaINT0178176 @ hg38
Intron Retention
Gene
ENSG00000183696 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr7:48106873-48107507:+
Coord C1 exon
chr7:48106873-48107082
Coord A exon
chr7:48107083-48107360
Coord C2 exon
chr7:48107361-48107507
Length
278 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTCTCCATGTGTGCCTCAGGGC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTCTGGAGCCCGGCACTGTGGTCATAACAGAGCAGGCAGTGGATACCTGCTTCAAGGCAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGGAAAACGGACCTTAACAAGAAGCTGGTGCAGGAGCTGTTGCTGTGTTCTGCAGAGCTGAGCGAGTTCACCACAGTGGTGGGGAACACCATGTGCACCTTGGACTTCTATGAAG
Seq A exon
GTGAGGCAGCGGATACGAGGAGGCATCTTTCAGCCAGGGAACCCTGGTCCGTCCCCTGAGCCTGCCTTCTCGCTGTGGACTGGCGTTTCCACTTGCCAGGCTGCTGTCTCAGTTACACTTCGCCCAGAGTGGTTATAATGACCCGTTTGAGTGGTCATTATAGGCAGGACCTGGATGGGTCTTGCTTGTCCCTGTGTCCTTCTGGGCATCAGTGGCGCTGATGTGTTGTAGGAGCTTCTCACATGCATGTGGTTCTCATGTCTCCATGTGTGCCTCAG
Seq C2 exon
GGCAAGGCCGTCTGGATGGGGCTCTCTGCTCCTACACGGAGAAGGACAAGCAGGCGTATCTGGAGGCAGCCTATGCAGCCGGCGTCCGCAATATCGAGATGGAGTCCTCGGTGTTTGCCGCCATGTGCAGCGCCTGCGGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183696:ENST00000331803:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(27.9=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGGCAGTGGATACCT
R:
CACCGAGGACTCCATCTCGAT
Band lengths:
296-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains