HsaINT0180807 @ hg19
Intron Retention
Gene
ENSG00000155975 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24928]
Coordinates
chr8:17123416-17125881:+
Coord C1 exon
chr8:17123416-17123490
Coord A exon
chr8:17123491-17125766
Coord C2 exon
chr8:17125767-17125881
Length
2276 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
ATCTGTTCTACCTCTACCAGATT
3' ss Score
7.24
Exon sequences
Seq C1 exon
TATAGCCGAAATACAGAAAGATGTGGAATACAGATTGCCATTCACCATAAACAACCTGACAATTAACATTAATAT
Seq A exon
GTGAGTAGAATTGTATCCTACTTTTTCATGTAAAAGGACTTAACAGTTTTTTTATTGTTTCTTAGTTATTAGAAATAAACTTTTAAGGTGAACTTATTTCAAGTAACTATAATTTATAAAATAGTGCACAATTCAGTGAAATAAAAATATTCGAAAGCTATCACTGTTATAGTGTTATAAGAAAGAAACTAGAAAAGAGGAAATGCAATAAAAATGTGTAATACTAATTCTGAGTACTGTAATTGTTTTTATTGATAAGCACTAAAATCTTAGCAGGAGGTATGCTGAAAAATGATAATAAAAAACAAAGGGGTTATATATATAAAGCCGTTAGAGATAGATTCACCTTTAAATCAGAAACAAGTTAAAATATTCCAAATTTCAGCAACAGATATACTACATCAACCAGAAAGTTCAAGATTAGATTTGATTTGCTGATCATTTTTAAGAAAAACAAAAAAGTTAAAAGTATAATTATGAGGGTTTTACTTAAGTTACAAAAAGTTGGACAAAGTGATTGCTGAAGTAGCAATTTAGCCTTAAATGCAGCTATGAGGCTGTAGTGTGAAAAGGCTGTGATTACCTGAGGTTACATTAAGTGGCTGCTGCTAGAGCAAGTGTTTGAGCCAGATAAGAAGGCACCTAACTTGAAGACAGGAACCTTATCATATTCACCTTCACGTTCTCCTTGCCAGCATACTGCCTGTACATAGGAGACCTTATTAAATACTAATGAGTGAATTAAAGCATGAATATATAAGTGCTGTGTTAACGATATATATGAGCTTTTTTATTTATTTACTTATTTTTGAGACGGAGCCTCCCTCTGTCGCCCAGACTGGAGTGCAGTGGCACAATCTTGGCCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCTTGAGTAGCTGGGATTACAGGCACGCCCCACCATGCCCGGCTAATTTTTGAATTTTCAGTAGAGACGAGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATACACCCGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTATGTGAGCTTTTTGAATCCTCACAGCAGCCTTGCAAATTAGGGCAAATTACAGAAACACGGTTAGTAAGTAGCATAGTCAAGATACAAACTGGGCTCCAAAGGCCATTTAGTGCCTTTTTTACCAAACTAGTTTTAAAATCTTCAGCTTTGTAAATGAAGTAGTTTTATCTCTCATCAAATGACCAGGTAAAGCTAAGCAGGAGAGGCCAACAAGGACCCAGTTTTCTTTTCAACAGTATGACCAACAAATAGTTGTCTGAACCATCAGGGGAACAAAGAGACAATTCAAAGTAAAATATTCTTGAGTTTTAGAGATTTGGAAACAGGGTTTCATATCCAGTAAACTCTCATTTTTAAGATTTCACTCACTAATCTTGGTTTTGTAGTAGTTCAAAAAAGGTTAAAATTTCTGCTTGTGTGTGTGTGTGTGTGTTGAAAATATACTGTTCTTTACGTGAAACCATGTGATTGACCTCTAACTTGGGAGAGATGTGTCATTTGGGGCATTTAGAAGGGAGCCGTGTAGAACCAAGTCTTGATGACAGCTACATTGTTTCAATCCTCCTACTTTACATTTTATCCTCTTTAGAAATACAGTAAATAGTGAAATAATGTTTCACAGCATGTTATTTATTTTTATCTTACTTTAGTTTTTCAAAGATGAGGTCTCACTGTGTTGCCCAGGCTGGACTTGAACTCCTGGGCTCAAGTGGCTCTCCTGCCTTAGCCTCCCAAGTAACTGGGACTACAGGCATGCACCACCATGCCCAGCCGTGACAGCATTCTCAAAGTAGAAAAACCACAGAAAATTATATGGCTAGAACCTGTGGTCCAATAAATAGCCAGACTGGACTAGTATGGTTCACCTGATAAAAATGCCTGATCTAATTTCTACCTAAGATTTTGTATAGCTTGGTATATTGTGTTTGAAAGCAACTAATTGGCATGATGTGAAGAATATTCTATAATTCATGTCCATATTTCACATTAAGATTTTACTGCGTTGAATGACTAGTCTTGTTACCAAATTTTAGTCTTAAACATATTTTCAGACAACACCATAATAGAGCACTTATTACTAAATGACCCATATCAAAGTGTGAAAATTTAATTTACTTTTAAATAGCTTTGTTTTAAGATTTTGACCATATAATGTACCTTTGTTATCTTTGTTTTTGTTTTTCATCTGTTCTACCTCTACCAG
Seq C2 exon
ATTGCTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGACATCACTTAATGGATAAACAAGGAGTGTATGTTACCTCTCCATTAGTAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-VPS37A:NM_152415:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(22.2=69.2)
A:
NA
C2:
PF139001=GVQW=PD(42.1=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)