HsaINT0180821 @ hg38
Intron Retention
Gene
ENSG00000167987 | VPS37C
Description
VPS37C, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr11:61130256-61133337:-
Coord C1 exon
chr11:61133255-61133337
Coord A exon
chr11:61132540-61133254
Coord C2 exon
chr11:61130256-61132539
Length
715 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTGGACCTTATGTCTTCCAGGCC
3' ss Score
7.52
Exon sequences
Seq C1 exon
AGAAATTTTCTTCAGCACTGCAGCCAGGGACCTTGTTAGACCTTCTGCAGGTGGAAGGCATGAAGATCGAAGAAGAGTCCGAG
Seq A exon
GTGAGAGGGCGAGGCGACACCCCTCTTCCCTGGACGGGGTGTCAGTCCCTGCAGCAGGGGCCCTTGGAAGGAGAAGCAGATGTCTGCAAAGCATGGAACAAGGGAGCTTTCGTAGATGGCAGAGGTGAAGGACATCTTTAGTCCTGGGGAGGCCTTTTGGGTATAAATAACAGGAACCCAGTCCCACTAGCTGAAGCAGAAACGGGTGACAGTGGACAAGGGCAGCTCGCAGCCCTGGATGGTAGGGCAGCACAGCAGGAGGCCCCCAGGGGCTGAGGCCAGCTCCCTACTCCACTCTCCCTGCTTCCTGCTTCCCTCCGGCCACCTCTTCAGCCTCTGTGGGCAAACTGGTGCTGTCCACTCTGTGTCTGGGTGGAAGAAGCTTCTAGGCCCTCCCAGTCCCTGGGCTAGTGCTCATCCAGGTGTTCAGCACATATATGCAGTGGCCACTGTGGGCCTGGCATGATGCCAAGGTGCCAGGACAGAGGTGACCACGACAGAGACAGTCCTCGCCTTCAAGGGACTGACATTCTAGTGAGGGAGACAGTGCATGTACCATATGTCAGCTGTGAGAAGGGGCGTATGGGCAGGGAAGAGGAGGGGGTGCCTGAGGCGGCGTGAGGTGGGAGGGCTGCAGCTGAACTCAGACCCTGGGGAAAATCAAGAGGCCTTGATCCCAGCTGCCCCTGTTGTCACTGGACCTTATGTCTTCCAG
Seq C2 exon
GCCATGGCTGAGAAGTTCCTGGAGGGCGAGGTGCCCCTGGAAACGTTCCTGGAGAATTTTTCCTCCATGAGGATGCTGTCCCACCTGCGCCGGGTTCGCGTGGAAAAGCTCCAGGAAGTGGTGAGGAAGCCCAGGGCTTCCCAGGAGCTGGCCGGCGATGCCCCTCCACCCCGTCCACCACCCCCGGTGCGCCCAGTCCCCCAGGGAACACCCCCTGTGGTTGAAGAGCAGCCGCAGCCACCATTAGCCATGCCTCCCTACCCTTTGCCCTACAGCCCATCCCCCAGCCTGCCTGTGGGCCCCACTGCCCATGGAGCCCTGCCACCGGCCCCTTTCCCAGTAGTGTCCCAGCCCTCCTTCTACAGCGGGCCTCTGGGCCCCACTTACCCGGCAGCCCAGCTTGGACCCAGGGGTGCTGCGGGTTACTCCTGGTCCCCACAGAGGAGCATGCCACCCCGGCCGGGCTATCCTGGGACCCCAATGGGTGCCTCTGGGCCTGGGTACCCCTTGCGGGGAGGCAGGGCCCCCAGTCCTGGTTATCCTCAACAGTCCCCATACCCCGCAACAGGAGGAAAACCTCCCTACCCAATACAGCCTCAGCTCCCCAGCTTTCCAGGCCAGCCCCAGCCCTCAGTGCCCCTGCAGCCCCCTTATCCCCCCGGGCCCGCCCCTCCCTATGGGTTCCCACCACCGCCGGGGCCTGCCTGGCCTGGGTATTAGACACACTCCTGGCCCTCGGCCCCTCCCTAGTCCCACCCACGCTCAACCTTTGGCCCAGCCATCGCCGAGATTCGAGGGTCAACTGGAAGTGGCGTTGGTGCTCCCTGTGGACTTGCGTCGGCACCCAGAGGCCTTGGAGGGACAAGGCACTGGGCGGTGTGACTGGTCATGGCACTTGCTGGCCTTCTGGCCAGAGGTCCTCCTGGAAGCCCCTCCTTTCAGTGCCTGGCTGCAGCGGTGCTAGCCAGGCTGGAGTCCAGCACCTCTCGCCGGTGTCTGTGTGAGTGAGCGCATGTGCGCATTTATGAGCATCTACTTGCGGCTGCACTCAGGGCCATTTGAACCCAGTGCAGAGTTATCTCTATGAGGAGGCCCCGGGTCTCCAGCCCCCTCCATCTCCCCTGGGGTTTGGCATATTTGACATGGAGCCCCATGCCAAGGGATGCAGCTGTTGGTGTCTGTCCAGTCCATTCAAGGCTAGCCTGCCCATGCACTGTGGCAGGGGTTGGATTGGAGGGAGAGAACAGAGTTGGGAAAAACAACAGGTTTGAGTCCTATAAAGCCATAATTTAACTCCAGTAGCTGATGTCAGACAAGCTTGTCCTATGTCCTATTTGAGTGGCAGCAGCGCCAGCCCAGCAAGAAGGCTGGGGGTTGTCAAGGTTGTCCCCAGACCTTGCTTGCAGTGGTTGGAGAACCCAGGGGGCTGCCTTGGGCCCTCTGGCCAGAGGGAAGCGGGCAGCTCTAGCCCTGGAGATTGTGGTCACATTGGGGCTTGTTTAGGATTGGAGGGCCAGGTCACCTCCCCAGCCACCCTCCCTTCTCTCCTCTGGGGTCCCCACTTTAGGGCGACTTTGCCCGAGGCCCACGCATCCATCCACTCCTTTAGTGCCTTGAATCTCATTCACAAGCAGCCCCCTCCCTTCCCCTCCCCTTCTCACTCTGTTGATGTAATCCTCCCACCCCCAGTGTCCATCCTAAGACAGGCATCAAAAGAGGCCCTAACTTTACTTCCCAAATGGTGCTTTTTAAAAAACACCATCACTACATTAGGGGCAATTTTTTCACACCTCCCTGTCTTCAGAATGTAAAGGGTGGGGATTATGTCTCTGTTTAATATGCAGCCCCCTGCACTGTGGGGTTTGGGGCATGTTCAGTAATAAGAATGAATACAATAGACAAAGGGGGTGTGATGAGTGTTAACTTGGTTGTTCCAGAGGTAAACCAGGTCTCAGGGAAGAGCCTGGAGCTGCTATTGCTTAGGAAGTTGTACGTGCCTTGAAATGTCCACTACCTGAGGACGCAGCATCTGGTGGGCCCGGGGCTGCTGGGGCCAAGGAGGGACCTTGACCTTCTGGTGCCTGCCCCTCCCCGGCCTATGTGCCATCCGCGTGACGCTAGGTCAGCGCTGCCGGTTCTTTACCAAATGTGCTTGCTTCTCCTAAGTTATTTATAAAGAGAAATCACTAATGGACTCTACTGGTTTGAGTGCTTCTGAGCTGGATGACCGACCGCCTGTATGTTTGTGTAATTAATTGCCATAATAAACTTTGATGAGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987:ENST00000301765:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.822
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(18.0=100)
A:
NA
C2:
PF072008=Mod_r=PD(24.0=15.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTTCAGCACTGCAGCCA
R:
TGTAGGGCAAAGGGTAGGGAG
Band lengths:
352-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains