HsaINT0182091 @ hg19
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127615755-127616604:+
Coord C1 exon
chr9:127615755-127615879
Coord A exon
chr9:127615880-127616483
Coord C2 exon
chr9:127616484-127616604
Length
604 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGCTTTTGTGCTGTTTCTAGGTC
3' ss Score
10.97
Exon sequences
Seq C1 exon
GGGTCCCGCGGCCGCCTAGGAGGGAGCCCGCCGGGGCGGGGCGGGGCCGGGTGCCCATGAACAGCGGGGTCCCGGCCACGCTGGCCGTGCGGAGAGTGAAATTCTTCGGCCAGCACGGCGGGGAG
Seq A exon
GTGAGGTCCAGCGGGCTCTGCCCAGACTCCCGGCTTTGGATGCAGAGTGGTTCCTGGTTCTGTGTAGTGGGGGTTCCAGAATGTTCTCTGGGCAGTGGCTCAGGACATTGAGTCCAGAGTAGACTTTGCTAACCCAAGAAGGATCGAAGTAGGTTCTCAGCTCCAGTGCCGGGCCCCAGCTCCAGAGCAGCTCTAGGTTCTAAGCTCTGCCTGTAAAAAGAGCCCCGGGCTCTGGGCTCTGCCTCGAGAGGGGCACAAAGCTCCCTGCTGACTCTGGTGTTTTCTGGGGCCCTGGCTCTAAAGTGAACTCAGAACTTAGAGTAGATTCTGGACTCTCCGTTGTCAGCTGCGGCTCTGGAATGGGCTCTTAGCTCTGGGGTTCCAGGCTCTGGTTCCAGAGAAGGCTCTTGCCTCCAACTGCAGGCTCTGGCTTTACGGGACTCGAGAGAGGGCCCAGTGGGTCCCGGGTTCTGGGCTCTGGTGGTGGAGTGAGGCTTGAAGTCAAGCTCCAACCCCAGGCTCTTGGGGGGCAGTGTTTAGGGGTCAGAGATGAGCGGACAGGGGTTTCTTCCCCAGAATGGGACCGCTTTTGTGCTGTTTCTAG
Seq C2 exon
GTCAACTCTTCTGCCTTCTCCCCTGATGGCCAGATGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAGGCTGGGTGGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-WDR38:NM_001045476:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.9=47.8)
A:
NA
C2:
PF0040027=WD40=PD(65.8=61.0),PF0040027=WD40=PU(28.2=26.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTGCCCATGAACAG
R:
ACCCAGCCTCCACAGCAG
Band lengths:
190-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)