HsaINT0184469 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100394988-100395245:+
Coord C1 exon
chr7:100394988-100395087
Coord A exon
chr7:100395088-100395198
Coord C2 exon
chr7:100395199-100395245
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATTCCCCCATGCCTTCTAGAGA
3' ss Score
6.17
Exon sequences
Seq C1 exon
CATCTAACCTGGTGGGCGTCCTACTGGGACTGCTGGTGCCTGTGGTGGTCGTACTACTGGCCGTGACCAGAGAGTGCATTTACAGAACGAGGAGGAAGAG
Seq A exon
GTGAGTCCTGGGAAGGAGAGAGGAAGGGCGGGTGGGGTGTGCAAACCGGGAAGCGGCTGGGCCCGTAAAGGGCCACTTGGGGACCCATGTCTATTCCCCCATGCCTTCTAG
Seq C2 exon
AGAGAAAACGCAGGAGGGAGACAGACTGGCCAGGCTGGTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTAACCTGGTGGGCGTC
R:
CTGTGTCCACCAGCCTGG
Band lengths:
147-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)