HsaINT0185534 @ hg19
Intron Retention
Gene
ENSG00000196670 | ZFP62
Description
zinc finger protein 62 homolog (mouse) [Source:HGNC Symbol;Acc:23241]
Coordinates
chr5:180278988-180288286:-
Coord C1 exon
chr5:180288219-180288286
Coord A exon
chr5:180279061-180288218
Coord C2 exon
chr5:180278988-180279060
Length
9158 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
TAATATATTTTAATATGCAGGTT
3' ss Score
7.05
Exon sequences
Seq C1 exon
TCTTCCGGCCGTGCGGTCCGCGCTTTTGTCCCGCTGGCGGCCGGGTTCCCGCGGCGCCGCCACAGCCA
Seq A exon
GTACGTGAGTCCGCGGCCGCCCGCGCTCCCGCCCCCGGCCCTTGCCTGCCACGCCCTCCCCTTTTTGGCCGGGTCTTGGCTGCTCCGCGGGTCTCGGGCGGGATGTGGGAGTAAGCGTGCCCCCTCCCCGCACATGTCTCAGTGGGTGCGTTTCTGGGGAGCGGAGGGGAGGGAAGACCTCGGGCAGGCAGAGGGGTGCAGGGCGCGCCCCTGGAACAGACTGGGCTCTGTGTGGGCCACAACTGCGACGTTTGAACGGACCAGCGTCATGTTAGGTCTGCTCAACGTTCCGAGAAGGGCCAGGGCCCCGCTCCGGTGTTCCTCAACTATTCATCCCTGTTTTGGATGGGAGGGGATCCCTAAAAATTAGCGCTTCAAAATACCCACCATTTCGTGCTCCCTCTGCAGTTAAGTTTGGTACTCTAGGACTTGAGAGTGATTGCGAGGGCAGAGAGACCTCTAGGGGTGATCTGATTCGACCTTCTTCCCCTCCGCTCCACCCCACCACCTTTTTTTCTTTTTTTTTTTTGGTCGGTGAGTGATGATGATAAGCTCCCGCTGCAGGTGTGAATAGAGACCCCGGAGGTGCGTCCTAGCCCTCATCTGGGGAAGCGCACCTGCATACAGACGGGTGCACCGGGGAGGAGGCGACCTGCCGCGTGTTCCTGCAAGCAGAAAAGGAGTTAACTAGGTAGGGAGAGGAAGGTCGAAGAGTTTCTTAGACCCAGGGGACAGCCTGCGGGAACCCAGGGGTGGGACGGAAAAGATCACTGGGGAATGCCAGGGCTGGGTGTGCTGCTCTAAGACATTTAAAGTAGTTGGCCAGCAGGAGCATTTCTTTGTGAAAGCTCAAGGCTTAAAAAAAATAATAATATGAAATATGTAATATATTCATATGGCTGGGATATTAAAAATATAAAAAGTTACCAGTGAAAGATTTCTTCCCATCCCGCTTAGGTATCTTCCTAGGCCCTACCCTCTTAGGTAACCACTTTTGTTCCTTTGTATCTTTTCCGAATTTCTGCAAATACTGGCAAATATAACTAGTTAGTTCCCCCTTTTTTCACACAGGTGATAGAAATCCTTCTAACTCCTTGATTCTTTCACTTTATCTTACTGGTCTCTACATGTCAGAACACAGAAGTTGTGTTTTGTTTCGTTTTGTTTTACAGAGCTGTGGTAAGTATTGGATGGGCCATTGTTTGGATGTTTTCGATGTTCTGTCCTTTTTTAGATCTATTCGGGGGCATTTGGGTTGTCTCCAATTTGTTGTTACTTCAAACAATGGTATACTCAATACAGTGTATTAGGGTAGGGATTTTTACAGAAGAAACTAAACAGCCGTTAGAAAATTATTTTTTTACATTAACTCAACCAGTTATTGGCAGATTGTTACATATGACAAGTCGTTATCAAAATCACTGATGTAGAGTGTTTAAAGAACAAATAAGACGTAAGTAGTTCTTCCCTTCTGAGACTTGTCCCTATATTTAGTGTTACACTAGCCTAATAGACTAATTGTGTCAATGACTCCAAGCCAGTCCCTGCCGGGTTTGATTCAGAAAATCAGCCTCCCTTTTAGTATCGCCTTTGCTCACCTCCTCCCCTACGACAACTAGAAATCTCTTCTCCACTACTTGGCATGAGAATGTTCTATTTCAGTTTTTTACTTTAAGGAAAAATCACCTTTCATTCTTATTTCTATATTTAAGCAATAGAACCAACTCACGTTAATCATATACATTCCTAATATTCATAAGACAAATGCAACAGTAGCTAGAACACAAACCATATTCTCTTCTCATCTGCATATCACTTCTCTGTTCCTTAGTCCCATCTTTCCTTTGTACATTTTGCCCCTCCTAGGTACTCTTTGTTCTGGGTTGGTAAGCATTTTGTCACTTTCTCTTGTCTTGTTTCCTTTCTTTGCTCATCTCCAAATCAAAGACAGTATCCAAGGATTTAAGGTGTAGAATCCACGCGTGAACCTTGAGGTGGTAGATTGTCTTGTGGAATATGGTTGGACTCTGCAAATTGAAAGTCGTTCCGGGCTAGTTGCAGTCTGTTAATAGGAAGGGGTTTTCGGCCAGAGCAGGCCACGGCTCCTCTCTAACGAGTTGTCTCGGCTCTTGAAAAGTGGCTCCTGAGTCTCGGAGGCAGAGACAGCAAGAATGTAGGGCCGGTTCTTAACTGTTTGCATTCACTTTTCTAGGCCTTGGCGATAAAGCATGAACAAGAAGCTCGGAAGAGTGCCCAGAGGTTGTTGGTCGTATGTAGTTTGGAAGGAGTGGGTGGCGTTCTATGTCTGACGCTTTTGGCTGATGTAACCAGGCTATTAGACTCATGCTGCGTGTTGAAAACTGGTTAGAAAGGGCTTGTCCATTCAGCCTTTAGAACTTTTAAGAAATTCAGGAGTTTCTGGGTCTTTATATGGAAGAGTTGTGTTTTGGGGGTAATTCCTTACTTGTGTCATCAGGGACACATGACTTAGCTACCAAATCAGTCTTGATTGGATTATAGTGACTTACTCCTGGAACTCCAGGACTCAGTCCTGTCTTGCCTCAATCCATTCTCCCACTGCAACTAGTGTGAGTGATCTTTCTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCGAGGCTGGAGTGCAATGGCGCTATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCAAGTCGAGTAGCTGGAACTACAGGTGTGCACCACCACATCTGGCTAATTTTTGTATTTTTAGTAGAGATGGATTCACCTCATTGGCCAGGCTGGTTTTGAACTCCTAGCCTCAAGTGATCTGTCTGCCTCAGCCTCCCAATGTGCTGAGATTACAGGCATGAACCACTGCACCTTGCCTGATCTTTTTAAAATATTTTTCTTTTTTTTCTTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCACTCTTCTTGCCCAGGCTGAAGTGCAATGGCACAATCTCAGCTTACTGCAACCTCCACCTTCTGGATTCAGGCAATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTTTTTTTTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGACCCACCTGCCTCGGCCTCCGAAAGAGCTGGGCTTATAGGCGTGAGCCACTGTACCCGGCCTAAAGTTTTTTTCTTATGAACTTCCATATACCCATCACTTGGATTCAGCAATTATCAGGATTCTGCTGTTTAACTTTTCCCTTTTTAGTTTTTCCTGATTGAAATATTTTAAATTCCAGATTCCATGCCATTTCACTGCAGACTTCAGTCTGAATTTAAAAAAAAAAAAAAAAGGTCTGGGTGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGTGGATCCCCTGAGGTCAGGCGTTGGAGACAGGCCTGCCAACATGGCAAAACCCCATCTCTACTAAAAATATAAAAATTAGCTGAGCATGGTGGCACATACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGTGGTGGAGGCTGCAGTGTGCTGAGACGTGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCAGTCTCAAAAAAACAACAAAAAAAAAACAAAAGTTCTAACATAGCCACAATGCCGTTATTATACCAGCCTAAATTAGCTCTGATTCCTTGATATTATCTAACAGAGGTGGGCACACTGCTGGGCTTGTGGACTGTTTTTGTATGGCCTACAAACTAAGAATGATTTTTACACTTTTAAAGGAATGCTTAAACAAAAATAGTACTCAGCAGTTCTGTGTGGCCCACAAAGCCTAAAATATATGCTACCTGGTTCTTACAGAAAATGTTTGCCAACTCCAGTTTAATAAAATAAGTAATTTTTCCAAAACGCATATCCAAGTTTGCTACTCCTTTGCCCGAAGCTCCCGAGGATCAAGTCTGGACTCCTTATGGTTGCAGCCCTTGTCTTTGCCTACCTGTCTGATTTTCCCTTTGCCTGCCCCAGATGTCTTCGGGGGGTGAACACCAGTTCCTCTGTACCTGCTCTTCCCTTGGCACTCTTCTCTTCCTGAAGCTATTCCTGTAGTCCATCCCCCCTTTCCCACCCTCCATGTCCTGTATTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAGGCTCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGAGCTACAGGCGCCCACCACCATGCCCGGCCATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACGGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTCATGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACCATGCCCGGCCGCCTCTGTCATTTTTATCATATGGTTATTTTCCTACCAGACTCTCCTACTAGTCTGCAGGCACCTTGATGGCAGGGCCTTGTCATATCCATGTCTTTGGATAGGAATAGCCCGGGGCCTGGAAAACAAACAGGATGCAGACAATAGTCTTAAGTTCCTTGGGCAACACTTAGCCTCAGAAATAACTGATACCCTAGAATGCATCTCCAGTATTGTTTATAAGGATAACTTAATTATCCTTATGTGTTACATTCTTTGTATTGTCTTTATGTTTTAGCAGCATTTACTCTAGTGCTGTCTTGGTGCTTTTCTGCCTGTGTTTTTGATGGATCTTAGTATTGATTAACATAGATTTCATTTCAAGCCATCTATTTTCATTGAAGATGCATGTTTATGTTAATCCATTTTGATTTCACTCAAGAAGAGGATTGGATGAACTACATCAGGTGACGGGACATCATGCGCCCCAACCCAAACAGAGGGGTTTAAGCAGAGCCAGAACAGGGAGGCCCCTGGCCTTCACCTAGGTTAGAGAGGTAAGTGGCAAAGTGTCTGTGATTTTAGGCAGACCAGGCCAGTCAGCAGCCAGTCTAACATGGAATCCCAGAGGACAGGAAGAAAACGAATAATCCACTTGTCAAAGAAACAAAGGAGGACAGATCAGGCTGAGAATCAGTGAGTGGAGTGGCAGTGAGGGTTGACAGTTGCACAGGCGGCTGGTGCAGAAGGCTTTAGGTGCCACAGTAAGTAGCCTGGGAGAACTTGGCACTGCCCAGTGACTAGGTGTGCATTTTACAAAAATTCTTCACAGTGGTTGGAGAAAGAATTGGGCAGGGATAAGAGTGAAGGTCTAGAAACGATGGCAGTCATGCAGAAGAGAATTTAGAAGGCTCAAACTAAGGCCTTAGCAGTAAGAAGGAGGTGGGGGATGGGGTGGGAGCTTCAGAACTACTTAGGCAATAGAATCAGCGGTCCTAGGGGCTGTTTTGGATGTGGCCAAGGGAAGTAGCCCATTTCTGATTTAGGCAAAAGTGTGGGTGGCAAGGTGGATATGAGGCTCTGTAATTGAGAGGGATCCTGGGCAGAGATGAGGACCTGAGACGGTGTGTGGGAGTGCTGGGAGCCATGAGGGCTCCCAGGGGAATATGTGGAGCCAGGAGAGGAATGTCTCAAGGTGGAAGGAGGGGCCAGAAACATCCAGGGGCAGCAGCGCGGAGGGCAAGCAGCAGCCTGAAGACGCTAATGCAGTGTGGTCTGCGTGGAAGAAATGAGGCATGAGAGGAGTGGGATGTGAAGACCACTTTTTCCAGATACAACAGGCAGTAGGATGGCAAAGCAGTACCTGGAGGGGAAGGTGTAGAAGAGGAAACAAATTTGCTTTCTGATACTTTAAAAACTTTTTGTTTGGTAATAACTTCAAATGCACAGAAAAAATTCAAGAATACGAACAGTAAAAAGATTCCCATCACTCAGATTTACCTGCAGTTAACATTTGACTTCATTTTGTCCTCTTGCTCTCTCTTTCATACATGCAAGTATTTTTCTAAACCATTTGTAGGTAATTATATACATCATGGCCCTTTATCCCTAAATACTTCAGCGTATATTTCCTAAGGATTGGGATAGTCTCATAGATAACTACAGTAAGTTTTCAAATTGAGTAAATTGGAAGTTGATACTGCTTTTACCTAGTCTACCATCCATTTTCCAACTTTTTCAGCTGATGTAATTGTTTTCTATAACAATTTTCCCCTCCGCTACAGATCCAGTCAAGGTCAGGAATGTAATATAGTGGTCAAGTCTCTTTAGCCTTCTTTAATCTGGAACATTTGTACAGCTCTTCTTTGTCTTTTATGAAAATGATGTATTTGAAAAATACAGTCCCCCCTCTTCTCTCCACCCTCTGTTTTAGTAGAAAACATTGTTCGTTTTGGGTTTACCTGGTGATTCAGTTCATGTAATGCATTCTCATAGGTGATGTGTCCTTCTCCCTACTAAAAGCATATTATGTCTATCTGCCCCTCTGGAGGTGTTAAATTAGAACACCTGGCCAAGGCATTGTCTCTCCACTCTTGTATTTTTCCCCCTTGTAAATAATTTAAGCATTATAAATATTTAAGACCATGCGGATATCCTGCTCCTTGTCAGAATTTCCTCCTAGACGTAGAATTCACTGATGATTCTCTCCTGATCCAGTCTTTACTCTGATAGTTGCAGAGTGCTGACTTTTCCAATTCTGGTATTCCTTCTACATTTATCAACCAGCACTCACATTCTGCTGTAAGCAAGAGGCCTCCCTTTCTCCCCTGTTTGTACCTGTGTAGACTCATGAAATCCTATCTTCAGTGGTTTATAATGTATCACTATACTTAGTTATTACGGTGCTTGAACACTGGATGTTCAAGCTGGGTCTTGCAGCGTGTCCCTACCCTTTTTTTGAGCCTCTCTTTACTTGCTGGTATAGCATGATGCTCATCTTGTATGTTTCCTGCTTTCAGCCTGCAATCAGCCATTTCTTTGAGGAGCTCTGGTTCCTTTTAGTAAATAATGGTAATAGTAGACCCAGAATGGGGTACTAGATGTGCTCATTACCACTGGAGTGTTTTGTTTTTTGGGCTTTCAGCAAACAGAACTAGGAAATCAGGAAATATATGCAAATATATGCATACAGCCATACAGGCTTGAATATACATGCATGCACATATATGTGATTTAGAAATCATAAGTTCACACCAGTACTGCAAATTCATCCCAAGGTTCATTTTCGCCTTCTTCTCTTGCTTATTTTTATGTCCCTTTCTCTAGGAGAGCCCTGAGCCCAACAAAATCAACACATTTACTCAGGTTCTTAATACATCTAAAGTTGTTTCAGAATCGCTTTGTTCATACCTCTACAGAAAACCTGCTAACAGTTGAATTATTTGTACCTCTTCCCACTGCCCCGCCTCCAGCTTTCCCCAGACTGAATGTACTTACGTAGTCAAATACGTTTCTAAGTTGCCTGGATTACTTCTGTATTTCTTTTTTGTTCTCTTCCTGCGATTGTGGTATTCATGGGAAATGCAAATAGGTTGATTTGTTTTGTTTTAGCAGTTTTTCTCCTTTCCCATCCTCACTGATGTTTAATTTTATTCTTTGAATATGTAGAATATTATGTATTTTGTATAGTAAAAACTATTAAAAAGGCTATATACTCGGAGTCTCTCTCTTTCTCCCATCCCTTCTGCTCCATTCTCCACACTCCTCCCTTGTAGGTGATGAACCTCATTGTTCTCTGGTTTATCGTTGCTATAAAGAGAAACACATACGTGCTTGTTTTCCTGTTTTCTTTCCTACACGAAACGTAGCATGTATATTACTCTTTTTCACTTTGACCTTTTGACTTTAGGATATACAGATTGCTCCATATCAATTCAGAAGCGCTCCTCGTCCTTTTTCAGTACTCCGTTGTGTATATGCTCCAGTTTATTTAACCAGTCTTCTGTGCTTGGAGATTTATGTAGGTTTCCAGATTTTGCAGTTACAATTAATGCTATAATGAGTCACTCTGTGCATGTATGTTTTTTATATTGTTGGAGGTGTATCTTCATTATAAATTCCTAAAGTAGGACTTCTGGGTAAATGCATATGTAGTTTTGATAGATATTGGCAAATTCCCCTTAAAAGGGGCTGTGCCAGTTTGCATTCCCAGCAGTGTATGAGAGTGCCTGTTTCCTCCACAGCCTTATCAACAGTGTATTGTCAAGCTTTGAACATTTGCTAATATGACAGGTGAGAAGTGGTGTTTTACAGTAGTTCTTATTTATCTTTCTCTCATTATGAATCAAGTCGAATGTTTAAGGACCATTTAAAAGAATTGTTTGTTCATCTTTTTACCTGTTTTCCTGTATGATTTGTAGTTTATTTTTCTTCAGTTTTTGAAAATGTATCAGTCTTTTGTTGCATATGAGTCATCATTAGAAAGCTTCCTCTATACTCAGGCCAGAGAGGCATTTACCCATGTTTTCTGGCATTTGTACAGCTTTTTTATATTTAGAGCTCTATTCCATATGGAGTTTATTCATGTGTGTATGGTGTGAAGAATGGGATCTAATTGTATCTTTTTTTTTTTTTTTTTTTGTGAGACGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGAACGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTCCCTCAGCCTCCCAAGTAGCTGGGATTAGAGGTGCGTGCCATCACGCCCAGCTAATTTTTGTATTTTTACTAGAGACGGCTTAACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCCACCTCAGCTTCTCAAAGTGGTGGGATTACAGGTGTGAGCCACTGCACCCAGCCTTAATTTTATCTTTTTCCATATGGCTTCATAGTTGTTACAACACTATTAAAAGGACCATCTTTTCTCTGGTAATTTCAGATATCATCTGTATCATTAATTTCTGTGTCTACCTGGGACAATGTCTGGACTTCCTGTTCTATTCCATTTGCCTGTCTATGTACCAGGACCATACTATTTTAATTATAGACGTTTAATAATATATTTTAATATGCAG
Seq C2 exon
GTTGCCTTCTTCCTCATCTCTGCAGTAACTGTCTTCATGGTTTCATAGCCTTCTCCCTGATACCCCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196670-ZFP62:NM_152283:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)