HsaINT0185617 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3807170-3808981:-
Coord C1 exon
chr19:3808870-3808981
Coord A exon
chr19:3807268-3808869
Coord C2 exon
chr19:3807170-3807267
Length
1602 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCCCACTCCCCGTCACAAAGACG
3' ss Score
0.51
Exon sequences
Seq C1 exon
GCCATGGAGCTGCTGGTGGAGAAGGCTGTGAGCAGTGCGGCTGGGCCCCTGGGCCCCGGGGATGCAGTCAGGCGAGTCCTGGAGTGCGTGGCCACAGGGACGCTCCTGACAG
Seq A exon
GTCAGTCGCTGGGCCGGAGGGCCCAGGAGGTGGGCGGCAAATCGCAGAGACCAGGGCCCGTGGCCATGGCACAGAGAGCTGGGGTCACAGACACAGAGGAAGTGTCCAGCCCAGGCAGGAGTGCGGCCCACAACACACACATGCTCCCAGCAGGAAGGCAGACAGGGCCGCGGTCATGGAGGACACCACCCTGCACGCAGGGCACAGACACGCAGGTCCCGGAAGGGAGGGCTCAGCCCCCACCCAGGAGACAACAGTTATGTTCTCTGGTGGCCACGCCCACCGGCGGCGGCACAGAGCCACCCCGGCACAGAGCCACTCTGGCACAAATCCACCCCGGTGCCTGTCCTCCAAAGATTATCCAGAGGGAACAGCCAGGAGCTCAGAGGACAGAGGGCGCAGAGCTGCCCAGCACAATGCGTTCTACACCAGCAGAGGGAAGAGAACGCGCCAGGACACACATGTGAGAGGGTGGCGGCCAGATACGGAAAAGGGTGTTTTCGAGTCATTTTTAGTGACATAGGATGATAGCAAGTGAAAAGGGAGCATGAAGCTTTCGGCCCATTGCCTGGGCCATCATGTAAAGCACACGTGTAGGCATGCACACGCACACACGCACATACTTGCACACACGGGCACACGCACGCACTCGCACGGGCACACACGCACATACACAGGCACGTGCATGCACACGCACAGGCACACACATGGACATACTTGCACACACGGGCACACATACGCACGGGCACACATATGGATATGAGCACACATACAGGCACACATGGATGTACTTGCACACACGGGCACACATGCACGCACACGCACGGGCACACAAGGACATGAGTGCACATACAGGTGCACACATGGATGTACCTGCACACACGGGCACACAAGCACGCACGGGCACACACAGACATGAGTGCATGCACACACAGACATGCATGCACACATGGGCATATACACATACATGAGTGCACACGGGCACACATGCACACACACAGGCACATGCATGCACACACACGGGCACACACATGGAATGAGTGCACATACAGGCACACGTGGACATGCTTGCACACACAGGCGCACATGCATACGCATGGGCACACACATGGACATGCATGCACAGGCACACATGCACACACACACGGGCACACCGTGCATGCATGGACACACATGGGTGCATGCACAAGCACACACCGACATGGGTGCACACACGGGCACACATGCACACACAGGCACACATGCACATACGCCAATGAGCACACACGTGCACACACGGACACACACGTGCACATGGGCACGCATGGACACACACGTCAGCGTATGTGTATATGCATGGGTGCACACAGGCACGAACACACACACAACGCCCAGGAGATGCTGGCAGCCCAACAGGCTTTGAGGGGCCAGGAGGACTCCCCCATGTGCCCGGGTGAGACCCTGAACCTGCTGAGAGAGGCCTGAGGGTCAGAGGTGCCACGGCTGCAAGTATAGCCCCATGCACGGGCCCCTGAGGCCCCACGGTGTCGAGGGACGGCCCTGTCACCGTCTTTCACGAGGGCATTCTCGCCTTCTTTGCTGTTCCCACTCCCCGTCACAAAG
Seq C2 exon
ACGGGCCCGGGCTCCAGGATCCCTGCGAGAGAGACCAGACAGATGCCCTCGAGCCCATGACCCTCCAAGAGCGGGAAGACGTGACCGCCAGCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.818
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(15.0=100)
A:
NA
C2:
PF075289=DZF=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCTGCTGGTGGAGAAG
R:
GCTGGCGGTCACGTCTTC
Band lengths:
201-1803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)