HsaINT0185634 @ hg19
Intron Retention
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24169808-24170947:+
Coord C1 exon
chrX:24169808-24169917
Coord A exon
chrX:24169918-24170836
Coord C2 exon
chrX:24170837-24170947
Length
919 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTT
5' ss Score
6.66
3' ss Seq
GTGCTTTTATATTTTGACAGCTG
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTTCTTGCTATATTGCCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCCGTTCTCCCGCCTCCCACTGCCCGCCTGTCACTGCCGTCTGTTCCCTGAGCTGTGCTTTACG
Seq A exon
GTACTTAGTAGTTCCATTGGACTAGGAAAAGTTTCAAAGTTGAAAAATAATGAGAGTAGTAAGTTGATCAGTGTTTTCATTATCAGAACGATTACAAGAATGTTCAGAAGTTAAGCAAATTTTGCTACTTTTGGAACGATGCGTCTCTATTAAGACAGCTGCTCCTTTTTTCTATCCTGATTTCTCATCCGAAATAATCTTTTGCTCAGAGTTGTCAGAATTTCTATGGTACACAAATAGGGAGGGGTTTCTAACATTTCATTTACCATGGTTGAAAAGTACAGGACTAGTGCTGTGGGTTATTTGACGAAAATGAGAAATGAGTATTCCCGTGGTAATTTTTTTTTTTTTTTGAGACTGAATCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCATTGCAACCTCTGCCTCCCGGGTTCAAGTAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGACCCTGCCACCATGCCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTTGACCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCGTGCCCTGCCTGTTTCCTAGAATTTTATGATGGAAACCTTTAGGTGGCATAGATACCCATTTTCAGTTTTTCCATTTTTCTAGACTGTAACAGGTCGTGAGCAGCGGTGCTCCATGAAAGGGCTGGAGGGAATGAGAGTCTCATGTTTATTATAAAGGGCTATGGTTTAGAAAAGTTCGAGAAACAGTGCATTGCATGAGGCTGACTAGAAGCAAGTTGAGAAGGCGGGCTGTGGTTGTTGAGGTGTTAAGGGTAAACATAAACTTAGAAGAACCAGGTGCTTTTATATTTTGACAG
Seq C2 exon
CTGGGAAAGACATAGAAGAACTATTAAGAAGATAGAATTGTTTTGCTGCGCAGTACAGCAACAGTGGATGTTCAAGATTAAGATTAGAGTCAAGTTGTGTGATTAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-ZFX:NM_003410:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTGCTATATTGCCCCAGG
R:
TGTCTTAATCACACAACTTGACTCT
Band lengths:
220-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)