HsaINT0185973 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20532810-20534166:+
Coord C1 exon
chr13:20532810-20532981
Coord A exon
chr13:20532982-20534097
Coord C2 exon
chr13:20534098-20534166
Length
1116 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CTTTTTTCCTCCTATCCCAGGAC
3' ss Score
9.68
Exon sequences
Seq C1 exon
AGCGCGCGGAGGGCGGGGCCTCCCCGGGCTCGGCCGCGCCGCCGCCTCCTCCGCCTCCTCCTCCTCACCAGCGCTAAAGCCGGGACTGGACCGAGCGGAGTTGTGCGTGTCGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCCCCAGCCAGAACCGG
Seq A exon
GTGAGGCTTATCCCCGCTGTCTTTCCAGTCCAGGGCCGCCGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCCGGAGGAGGAGGCGGAGGCGGAGGCGACTAGGGAGGCGGAGATGGGTGAGGGCAGCCTCCGGAGCCTCCCACCGACCCGGGATTAATACCCCGCGGCGCGGCCGCCGTCGCCGCTGCCGCGTCGGGGCCTCGGGGGCAGCTCGGGGCTGCGCTCATGTCACAGGCGCCTTTGCGTGCGGCCCGAGGGGCTGGGAGAGTGCGGGCGAGGCCGGGAGGGCTGGGTGAGGCGGCCGCCAGCGGCGGGGGTCGCGGGGCCGGCGGGGCGGCGGGACGGCGGGACGGCGGGGCGGGGGTGCCGGCCGCCCGGGGAGGTCGCGGGGCATTTTCCTTTCTCTCCGGCGGGGGGCGGGGGAGGGGCGCCCCGGCTGGGTCTCCGCTCTCGGGGCAGCGCTCCCACCCTGTCCACCGGAGCCGAGGTCCCCAAGTTTTTCGGGGTGAGGGCTGCTGCCTCTGCTCCGCCGGGTCCCCTCCTTCGCTCTTCTTTTCCTCGGCGCTGCGCTGCGCGGCTCTTGCTCCGCACGTATTGTTTGGCTGGGTCTCTAATGGCGGACGGGGAGGCAGCGCTGCCGGTCGCCGACTGCAGGGGGGGGCAAACCTCAGGCCCAGGGCAACTGCTTGGGGCAAATGTGGGCGATATCGGCCCAGCAGTGACGTGAGCCGCCCCTTACCTCTGAATTGGTACTTGGAGTGACGGGGATGACGCTGGGTGGGCAAATTTAGGAGGGAATACAAATCCCTTGCTGGCGTCGAGGCAACGTTTTCCCTTCCCCCCTCCCTTCCCGGGAGCAGGCTCGGTGTCCTTAGGCCCCCTCCCTTCCAGATTTTGCCTTTCACATGGGTTTTGGCCCCAAATATGTATTTTGCGCTGTTTTGCCCCACTTACGCAGGAGGGGGCTGTTGTGCGCATGGTGGGGGTAATAATAGAAGGACCGAACCTCCTTGACCTCTTATTCCCTTCTCTGCCTCCTTCTGGCAGAAAGGGTTGGGTTCTCCCACCAGGTTGTGTGTTTTTGATACATTTTTCTTTTTTCCTCCTATCCCAG
Seq C2 exon
GACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCCTCCTCCTCCTCA
R:
GGGGGTGTTTTCCTCCTCACT
Band lengths:
190-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)