HsaINT0186172 @ hg19
Intron Retention
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:12897]
Coordinates
chr7:64441765-64442494:-
Coord C1 exon
chr7:64442362-64442494
Coord A exon
chr7:64441861-64442361
Coord C2 exon
chr7:64441765-64441860
Length
501 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ATTTATTTTCAATAAAACAGGTA
3' ss Score
5.72
Exon sequences
Seq C1 exon
GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTTTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGCATGTGATGTGAGAGAACTACAGAAACCTGGTTTTCTTGGGTGAAG
Seq A exon
GTAACTTCAATACACATTTTCTAATATACCCTAAAGGTTTTAATTCTCTTTTTTGTAGAATGTTTTTGGTGATTTATGCTTTGCATAAATTGAGTTTCAGATCCCTGTTTTCAAAAAAATCTTTTAGATTTGTCATTGTAGAAAATAGTTTATTCAAGATGTTTCATCTTTACCATAACTTTCCACATTCCTGAGATGATCTTTATCATTCAGTCTTGATTAGTGGTAATTTTAGAAATTTATTGGCATAAAATATTGTTGCCCACACCTTAAAATCTAACTCCCAACAACAATTGTTTTGATTCAGTAGTACCAGGTAGTGAAATTAAGAAACTACAAATTTAAAATATTTTCTAAATCTTTAGAAATTTTTGTTATAAATTAGCATTTGGGGATTAATTTACTAGAATATTCTATTGCATTCTCTTTACTGAGCACATTACCAAGTTGGTAATTGGAGAATATGTGCAAGATTTATGTTATTTATTTTCAATAAAACAG
Seq C2 exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926-ZNF117:NM_015852:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTGACATTTATGGATGTGGC
R:
TGTTTAGCTACCATCTCATGTCTCT
Band lengths:
222-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)