HsaINT0186221 @ hg38
Intron Retention
Gene
ENSG00000196387 | ZNF140
Description
zinc finger protein 140 [Source:HGNC Symbol;Acc:HGNC:12925]
Coordinates
chr12:133079838-133081329:+
Coord C1 exon
chr12:133079838-133081072
Coord A exon
chr12:133081073-133081272
Coord C2 exon
chr12:133081273-133081329
Length
200 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTCCTTTCTCTCTCTGCCAGGTC
3' ss Score
12.46
Exon sequences
Seq C1 exon
TATGGATTAGCCATTCTTTATTCCTTTACTTTCCTAATAAACTTGCTTTCACCTTATGGATTCGCCTCAAATTCTTTCTTGTGCAAGATCCAAGAACCCTCTCTTAGAGTCTGAGATCCGGACCCCTTTCCAGTAGCAAAAGGTCTTAGACTGAAGTACTGACTCCACAGTCGTTGTTAAGAATCCTAGTTGTTTAATAGAGGCGGTCTTGGGCTCTTGCTGGGCCGCGGTGTGTTCTGGGAAGTGTAGTCACCTGAGTCTCCAGTTCCTTGTCTCTGGGCCGTGTGTGCACGCCAGCGAAGCACTGTGGGAGTCGTAGTAGGGGAGGAAAACCCTATACCCTCTGGCGTGCGGCGCAGGAGTTTGGGGGAATGTAGTCGCCAGAGCTCTGCGTTGTCTTCCGGCTTTGGGCGTGGCCACGATGCACTCTGGGAGTCGTAGTAGGGGAAGAACGTCCTCCGCTCTTTTGCGCACGGTCGCTAGAGGTTCTGGGAAGTGTAGTTGCCTGAAGCTCGTGTTCTTTGTCTTTCGATGATGTGCGCTTGGCCTCAAAGCACCCTGGGAGTTGCAGTGGGGCGGGGAAAGCCATATGCTCTCTCGCGCGGGGTCGCGGTTGTTTCTGGGAAGTGTGGTGGCCTGAGTTCCACGTTCTTCGTTTCTCCGCTAGTTGTGCGCTTGGCCGCGAGACACTCTGGCAGTTATAGGAACACAAAGGTCTGTGTACTCTTCCGCGGGGGGCCGCGGTTATTTCTGGGAAATGTAGTTGCCTAGGACCCGGGTTCTTTGTTTCTCGGCTCTGGGCGTGGGAGGATAGCCCCTATGCTCTGGCGCACCGGGCCGCGATGGCTCTGGGAATTGTAGTTGTCGCAGGCCCTCGTTCTTTGTCTCCTGGCGTTCTGGGCACGGCAGCGAGGCGCTCTGGGAGTTCCAGTAGGAACGAAAAGCCCTTGCGCGCAGGGCCGCATTGGTTTCTGGGAATTGTAGTTTCTTGAGGCCGGCGGCCTGGTTGGGGTGACGTCGGCGAGGCTTCTGAAGACGCAATTCCTGCGACGCCCGCGGAGGGGCCCTGGGGGGCGGCGCCGAGCGTCTGGCCTGTGTTGGCTGTAGGCAACGAAAGGAGCCCTCCCGGTCTGCGCCGGATGGCCCCGGGCGGTGACTCGGTCCGGAGCCCTGGAACGCTACGCCCACCTGGCGGAAAGCACCACGGAAACGCATCCTTCTGTGGCCACTGTTAG
Seq A exon
GTGAGGGGGTTCTGGGGAGGCGCGCCGTGGCAGGAAGAGAAAGCCGGCGCCAGTGGTCCAAGCGCGATCTCTCAGGGCGCCCTGCTCTCTACGTGGGAGGCGCGGAGCGGGGGCCACGGGAATCCCCAGTGCGGGAATCTAGTGACTTGGGCGCGGCCTAGCTGGCCTGTTCGCTCAGGGCTCCTTTCTCTCTCTGCCAG
Seq C2 exon
GTCTGCCATTTTACACTTTTCTGATCTCCTCCTTCCCTTCTGTGAGCTATGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196387:ENST00000355557:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGTTTCTTGAGGCCGGC
R:
GCTCACAGAAGGGAAGGAGGA
Band lengths:
304-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains