HsaINT0186333 @ hg38
Intron Retention
Gene
ENSG00000197841 | ZNF181
Description
zinc finger protein 181 [Source:HGNC Symbol;Acc:HGNC:12971]
Coordinates
chr19:34734970-34736206:+
Coord C1 exon
chr19:34734970-34735046
Coord A exon
chr19:34735047-34736074
Coord C2 exon
chr19:34736075-34736206
Length
1028 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTTTGTTGTCTGTTATAGCTT
3' ss Score
11.32
Exon sequences
Seq C1 exon
GACACTGCCCATCTCTAAGATAAGAGCCTGGAAAGAGGACTCTGTTGGCTGTTGGAAATTGCAGAGTAATGCCTCAG
Seq A exon
GTAGGTCGGTGTGTCCGCAAATCTTCCTGAAACACTTTATCAGGACTGTGTGTTTGCTTTGCTTCTCCTGCCTGTTCCCACCTAACCAAGTCCATTTAAGGGACTGGATCCATGGTTCCTTTCAGTATAGGAAGGACGGAGCCCACAGGAGAGCTCCAAGGTATTATCCTCCTCACCCAGTGTTCCTCTTTTCTACAGTTTTCTGCTAGAAGACTTTCTAGTCTTGCCAACATTTTAAAACTGTAATTCACAATGCAACTTTGGAATGTAAGGTTATTCGGTTTATGGTTGTCAAAACTGTACCATGTGGTCTCAAGTGAAGAGATGCTTGCAGTCATCCTTGATTCTTCCCTTTGACTTATACCTATATTCAGATCCTCTAGTTGGAGCTAAGCTATACACTGTATACAGAATCTGACCATTAGTTACCCCAGCACTACCACCACCACTACCACCCCGGTAGTGATAGCAATAAAGCCACCTGGATTATTGCGGTAGCCTCCTAGCTGGATTCCCTGCATCTGCCCTTAACCCTCATCAGTCTGTTCTCAGTACAGCTGTGACCGTGGTCCTATTGTTACATAAATTCCTGTCATTCCTCAACCTATAATTTTTCAGTGGCTCTAACTGAGTCACTTCTGCAATGACCTATTTGTACAATTAGGCCATTACCTTTCTGATCCCACCTTCCTTCTCTGCCTCCTCATTCCTGTGAGCTCTAGCCACTGTCACTAGTTGCTGTGCCATCGACGTGGAATATTCTTCCCCCACATACGCACAAACTTGCATCCTTATCTTCTTCGTGTGTTTGTTCCGTGGTTACTTTCTCAGAAAAGCTTCCCTGAATGGCTATTTGCAATCGCAGTCACCTTCCCTCGCCTAGCACTTCCACTCCTCCATCACTGCTTTGTTGTTTTCCACAGTGTGTGTCACTCACTAGCTGATGTACTGTATGTTCAGTATATGCACATGCTCATTGTCTGTTCCTGGTGGGAGGAATCTTTTTTCTTTTTTGTTGTCTGTTATAG
Seq C2 exon
CTTCAGTACCCAGAGGGTTACCTGGCACCAAATAGATGCTTAGTAAGTAATTGTGGAGTGAATAAGATGAGTAATGACGAACTGGTGGGGCAGAATCATGGCATGGAAGGTGAAGCTTGCATAGGAGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197841:ENST00000392232:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCCATCTCTAAGATAAGAGC
R:
TCCCCTCCTATGCAAGCTTCA
Band lengths:
206-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains