HsaINT0186394 @ hg38
Intron Retention
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3371577-3379167:-
Coord C1 exon
chr11:3379038-3379167
Coord A exon
chr11:3371704-3379037
Coord C2 exon
chr11:3371577-3371703
Length
7334 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTTGTTGTTTCTTCTTCAGACT
3' ss Score
9.48
Exon sequences
Seq C1 exon
CCTTTGTCCCGACAGAGCTCCACTTCCTGTCCCCGCGGCTCTGTGTCCCCTGCTAGCCGTAGGTCGTGTGACCCGCAGGCACCGGGAGATCCAGAAGTGAAACGCCAGGCTCTCTGGAGGCCAGGAGATG
Seq A exon
GTGAGTGTAGGGGCCAGGCCTCCTGAGAGACAGGGAGGGGCGGACTGGAACCCGCGGTACCGGCTCGGGAGGAACCGGGCTGCCCGGGTGGGTTCCGGGCTCCGCGGACCCGAGGCCCCTCCAGCTGCACCATGGCGGCCGGGCCCCGCGCGCCCCGGCGCATCCCTGCAGAGCGGCTTTGGCCCAAGCCCAGAGCCATGTCCCCCCGGCAGCTCTTCGCCCGCAGACCCTCGTCTCCCCGAGTCAGGAAGGGAGAATCCCGACTCCGTGGGTGGTTTGTGCATAAGAGGATGATCTGTAGCCCGTGGGGGCCCCAGTCCCTCCTTTCTCTCGAGGGAGTCCTTGCAAAAATGTGAAAGAGTTTTATTTGAGCAAAGAGCGATTCATGAATGGCAGAGGACCCAACCATGTTTTTTGGGTTTGGAGGTCCCACCAGCCGGCCTTGAAGGAAAGGCTTTTATCAGGTGCATGAGGAAGCAAACCACATTCATTCATTAGTTCGGTACAGTTACGTCATCTCCTGATTTCAGCTATCTAGGCTGAAATTTTCTGGTCCTGTAATCAGAAGTTAATTAGAGGTTTGTGGTTGACGAAGCCTGAATTTTGTTTCTGCAAGATAGTCATTTGCAAGAAACGCATCTGAGTTAGATTTTTTTTTTTAACCTAAGAACCCAGGGCACTAGAGCCACCTCAGTCGGATTGCCTGCTATTTAATTATTATTATTTTTGAGATGGAGTCTCGCTCTGTCCCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAATCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGTCCTGCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGTCGTGAGCCACTGCGCCCAGCCTGGACGGCACTTTTTAAGAGATTTGTTTTCTGTTTGTAATCATTCCACGTGACAGGAAAGCAGAGAATCATCCCCTGACGCTATTGTAAAAAGTCTTTGTGCCTCTCCTCCTTTTTATTTTCCCTAGGCACAGACACCTTACCAGAATGTCTTTGGTTTGAGGTTCCACTTTGGAAACTTGACAGGGTGATTTGCTCTCAGCCACCCTCTGGACTTTTTCCTCAGTTTCAGTATTGTCCAGGGATAACACAGGATGCCCACCATGGCCATGTCTGCTGGAGCATCTAGTGAATTTCAGGCCCTGGGTTATTTCTCAGAGGACAGCCTGAGGTATGAAGTGTGGCCTCTCCAGGGAGCAGCTGGATGCCCTGGGCTGAGAGAAATCTCCTGGTCTACTCTTCCTCTAAAGAGGTAACCACTTAGGACATTAAGATTGTCTTCACCCAACCCAACTTTCAATCCCTGGAGACACATGGCTGATCAGCCAATCACATGCCCCTGTCAGAGGGAAAAGACCGAAATCATTTCTGCCCTTTGGACTCTCAGATTTGTGAAGGGAGACAGAATGTTTCAAAGAGCAAGAAAAACTCCACCCCGTGAGATGGTGCAAAACCTGTAAAGCAAAATTCACCTGGGACACTCAGCGGGGCACAGTGCAGTGTATCATCGGGGGTGGCCGGTGAGCACTTCGGTGAACAGGATGGAGGTGGGAGAATCTCCCAAGGAATAGAATAGCCTGACTTGACACAAGTCATTAGCTGTGTCTGTGTTCCAGTCGGCACTGCCACTCTCTGTGTCTCCTTGAAATAATTTATTCACTTACTGCAATGTTGGATTTTTAATTGTAAATTTACATTTTATCAGTAGAGCTTGAAAGGTAAGAAAATACTTACAAAGGACATGAAATAGGTCAATTTCAGGAAAAAAGTTAAATATCTAGTCATACATACCTTTTTCTTCTCCAGAGTGATTAAGGGTAGAAAGTTACTTAGGTCTGTTCTTTTGTGGAAGATGATTTCCAACAGAATCCCAGGGCTTAGCTTTGGGAATGCTACCAGGGAACATAAAATGCTTCTTGGATGGCTGTGGAGAATGTTTACATTTTCTACAAAAAAATTATGGTAGATTACTTGGTAAATTGCATAGATTCATCAGAACATGAGCTCTTTTTGCAGGATGAATTTGTTGTCATGAGTATCTCTGTTTTATATCCTGTTCTCTAGATGTCTGAGCTTAATGCTAAGTTGTAGGAGATGGAACTTAGCACTTCTAAAAGTGTTCACATGTGATTGTTTACTATATGATTTGTTATGGAAATAGTTAAATGACAAGTTCATTGTCTGAAAGCAATAAATAATTTTGCTTTTTCTGTGGAGGTGAAAGTGTAAGTGCTTACAGTTTCCTTTTCTTCTGTAAACTGTTTCAGTGATTTTGTTGGATGTTTCCAACACTGGGTATTTTCTTATTTAAACCTAAGTGGATAACCCTGATTGGGAAGTTGAAGCCCAAGAACAGTCATTCCAAGCTAAGGCTAATACTGAGTCTGCAAAAGAAAGCAATCGAAGGCCTGGCTCAAGCTTGTCCAACCCACAGGCCTGGGCCACATGCTGGCCTGGGCTTTGAATGTGGTCCAACACAAATTCGTAAACTTTATTAAAACATTATGAGACTTTTTTGTGATTTTTTTTTTTTTTCAGTTATCAGCTATCGTTAGTGTTAGTGTATTTTATGTGTGGCCCAGGGAAGCCAAGATCGGACACCCCTGGCCTAGCTAGTGCTTCCCAAGGAGCCTCCCCTGCGGGTGCGCCAGACTGCTCACAGCAACCATGGAAGGAGCCTTTCTACAGAGAGAAGCTGCAGAGCCCGGGAGCACTGGGGACCCACAGGCAGATGCAGTTAGAGTTGGGATGGAAGGAAGCTGGGGAGGACTTCCTGGGTATGGAATCGTTATTATCCTGGGGCTGTTTCTAGACTTCGTCAAATAAAATAAATTTAGCTTTAGATAGGAAGTTATTGAACTCTAAAGGAGGATTGCAACAGGGAGAAGGTAGCAACTATCATGGATCTCATGGCCATAGAGGGCATCTGTGCAGGGTCACCAGGAACTCTCTCACCAGCACCTGGAGTCTTTTGGACATTCAGGAGTGCACTGTGCAGACGGGGCTCAGGCTGACAAAACGGTCTATCTGTGCTTCTGTTGTAGAATAAGAGAAATGAGTCACCCAGGGTTTGTTCCTCCCCTCAGAGAAGAAACCTCATTGGTATCCACATGGGAATTACTCCAGTTTTTCTGGTACTTCAGTAAAAAACAAAAATGAGATCTGGAGATTCAAACTGATAAACTAATTGATTCCATCCTGTGTAGCCATTAGGAAAACAGAGAAGGCAGCCATGGTCCCCGCAAGCCAGAAACTTTTCCATTTCCAGTAACTGGATAAATCATTGAATTCAGCGTCTTGGGGTCAGCATGAAGAAGGGAGTGGTCAAAGGGACTTCTGCTTCATTTGGGCCATTTTCCTGATGTGGTTGTTGTGAGTTCTGATGTCATATTGAAGGGATATTCAGACAGACAAGGTGGTGGTGGTATTATTTCTGTTGCTTTTGCCCGGCTAAAAATAAATATTTAGCTTCTACCATATCTGTCCTAGAAAATCCTAAAGGTTTCGGTTAAATTGCTTGTTATTTTATGTTATAAAATAGACAAGGAAGTGGCCAAAATAGATTAAAATTATACAAACCCTGGGATTTAAATTTTGGGGTGGGGGGCAGTTTTAGGAAAAACAGAATTGTAAATACTCTAGTAGCATAGAGAGCAGAATCCTGCGTAGGGCCCTCTCCCTGCCCAGACATGCCCAGACTCTCCTTCTCTGAGTCTCATCCAGGTCTGGCTTCACCCTGGACTCTCCTCCGACAGAGTTAACTACAGAATTAAATCAGAGTTTTGGGTTTAGCTACAGAGTTAAATCAGTTTGGAGTTTAACTACAGAGTTAAATCAGAGTTTGACTCCTGCTGCCTCTCCGGAACTGATACACAGAATTTTCGGAAACCCCAAAGCAGATAAATGGGATCAAAGGACTCTCTATTTTGGAGCCTTAATTTTTCTTTTTTACTAACACCAGCGCTGTTAGAGACATCGTATCCAGCAAGCTCTTTCTCAGTCCTGTGGGTCTAATAGTTGCTTCACAAGCCACAAGAAAGTGAAGATAAACACAACAATGGAAAGTGCCTTTGCACTACACTTCATCCCCTCTGTATCCCTTCCATTGGTCTATCTGGAGCTTTTATCACTACACTTTTAAAACGTTAATGATAGGAAAATAGAAGAGGAACCACAAAGCCTGGTCCCTTCATCTATATCTTGAGAGTTGCAGGACACTTGGTTCCATCACCCAGGGTGTGGTGAGGATTAACTCACATGACGTGAGGTGCCCAGCACAGTGCTGTCACATACATCCGAGCACCCCGTGCCTGCTTAATAAACACTGCATTCATACGTGTGTACACATTGTTTTCCAAATGCAGACAGACTCAGACATTGCTTCCTTCTCCAGCCCTGGAAAACTTTAAAGAGCCAGGAAATAATGTAATCTTTCAGAATAGAGATTGGCTGTCTCCATTTGCACCAGAAGAACTTATGTTGTGGTCAGAGGGTTGGGTGTAAGGGACTGTGCTGGGGCTGCTTTCTTTAGCTGAGTGTTAATGATCACAAGTCTTGGGGGAGCAGCATCACCATTAATGGCAGAACTGTTAAAAAATCCAACCCATGAACCCCTTTGAAATCTTCAGAATCACATGACTTAGAGTGGGGCCAAAATTACCAAAAGATTCATATGCACATTGAAGCTTGAGAAGCAAGGCTTAGCTAAATGGTTCTCAGCCTGGCTTCTAATTAAATCACATGGACAACTCAAAAAAAGGCCCTCACCTTTGCCCTCACAGATTCTGCCTATTGGTTTGGGTGGAAGCACCAGTGCTGTTTAAGTCACATGCATCATGGGATTCTAAGGTGTGGCCAGAATCAGTGATGGGGGGTTTCAGATGCATTTGTACGAGTTGAGCTCAGCCTTGGTTCCAAAGGGAGGTCACAGGGCCTTCTTTGCCTAGGTTTCAGAGGCCAGCTCAGTGCAGCTTATACTCCAATTGCTGAAGCAGAATTGCTGTTGTTTAGCAGGAGAGGGAACCTGAGAGCAGGAAGAGAGAAAGTCACATTTTGATCTCCATGTAGAAGTTTACTGTTCCTGAATCTCTTTTATAAAGAACAGAAAAGCGTGGACTTTTTCTGTATTTCTTGGTCTTTCTGTTGATGGTTGTGGTGGTAGCAGGTGAAGGGGTTGTGCTAACACCTTTAAAGGCATATTCTCACGATGCAGGTGTGATTTGTCCAGAGAATCTTTCCTAAGAGGAAATCCCAGAGAAGCAGGAGAAAGAGAAAGAAATGGCTGGTGCTCAGGTAAATGCATCTCAGGTCAGGGGTTGTGTCCACTTTTGCTCCTGAAATGTCATGTGTTTAGAATTTGGAAACCTTTACTTCTCTACTTGTGGTGTTTCTCCATAGTAAGTTTGTTTCAACTACTTTTTTTTCTTATAATAATGAAGGGTCTCTGAAAATATTTGTTTTCTATATACCAAAGCCGTCTCTCTGTTATCTTCACCTTGACTTCTTATATGCCATGAAGAATTCTTACCATGACTTTATGACCTGCAGTATTAAAAAGTTCACTTCGTGGCACTGAACTTGTGGATACCCAGGATTCCTCTTGAGGATGGGGTGGGTTTTTGGATATCAGCAAAGAAGGGAAATGTGCACTCTTTAGGTTTCATCTGGATGCTCCATAAGCTGCATGCAGAACAGGACTAAGAAAATAAACATTTAAACCAGATGACATTTATCTCTCAGAATAACTCAAAGCATTCTGGAAAAGAGAAAAATGAAAAGACACTTGCTTTTTAGAATGCTAAAGAAAGACTCTTTTAATACACTATTAGAGATTACTGCTGGGCATGGTGGCTCATGCCTATAATCCCAACACTTTGGGAGGCCTAGGTGGGCAGATCGCTTGGGGCCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAAAATACAAAAATTATCCAAGCGTGGTGGCACATGTGGGTAGTTCCATCTACTCCGGAGGCTGAGGGACGAGAATTGCCTGAACCAGGGAGGCAGAGGTAGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCTACAGAGTGAGACTCAGTCTCAAGACAAAAGAAAACAGATTACAGAACCTGGGAGATATTTGTCAGAACCTGGGAGATATTTGTCAGAACATAGGAGATATTTATTTGTCAGAACCTGGGAGATATTTATTTGTCAGAACCTGGGAGATATTTGTCAGGACCTGGGAAATATTTGTCAGAACCTGGGAGATATTTGTCAGAACCTGGGAGATATTTATTTGTCTCTTGAACTTTGCATAACACTAAGGTTTCGGTATGATTTGATTCAGATTATAATTGACCTTTTGGCCAATATCACACCAGTAATATGTCCTTCTCTGTGCATTGGCACGTGATAAAAATCTGTCCTATTACAGTTGATATTAGTTTTATTCAGTTGTTTAAAGAGCTCCCTGACAGATTTTCCATTGTGGAGTTTATTTTTTTCTCTTTTAAGTACCTTGAGGAGATTTACTAATTAATGTGCATAAATAATCACATTTAATCTGAAAGGTTTTGCTTCTTAGATTCTTTTTGCATATGCCTTGCTTTAGAAGATGAAGAATCTCATCTCTCTTTATGGTTTAGAAAAACTGGGATAAACCCAAGCTTGCCACTTACAGGATTTTTGACAAAATATTGTCCTTGGGCCCAAAGGACTGGCATCACTGGTGAGCGCGTTAGAAATTCGGAAACTCAGCCTTGACCTCCGATTTCCTGAAGCAAAATCTGCACACTAGTTTATTGGACACATGAAAATTGGAGAGGCAGCTTCTAACTCACCATGACTTTTCTGCCTGCGAAATATACACAGCTTATTCATGTGACGTAAATGTAGCACTCAAAAATGGACATGCCTTTGTTGATGCCCTTAATGTTATACTTGTTATCAACCAGAAAAGTATTGTATATACACTGCTTATGTGGCTCTCAGGCAATTCTCTTTCCTCAGAGTTAGAGAGTATTCTTCTGCTAAGAATTACCTTATTGTATAATTTCAGTCACTTGTGTAAGTCAGAACCAGTTCTCTTCACTCGCTCATTTCACCTCGAATCAAGTATTTGTTATTGTTGTTGTTTCTTCTTCAG
Seq C2 exon
ACTCTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCTCGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801:ENST00000399602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF102634=SprT-like=PU(17.6=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains