HsaINT0186415 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123610825-123611244:-
Coord C1 exon
chr11:123611125-123611244
Coord A exon
chr11:123610901-123611124
Coord C2 exon
chr11:123610825-123610900
Length
224 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTG
5' ss Score
-0.49
3' ss Seq
GTGTATATACTATATTGCAGTAG
3' ss Score
4.19
Exon sequences
Seq C1 exon
GTGACACCCAGGGCAGCTACACTCAGAAGCCACAAGGAATGCTAGTGGAGCCCCTCATCCCTCCCAGCTTCTCTTCCAAGCTGCCCCGTGGGGCTTGATCCAGGAAGCTACTTCAGAAAG
Seq A exon
GTTGTGGGATAGCCTTGGGAGGAGGTTTGTTGGTGGGAAGCGTGTGAACGCGGAGCAGTCTGGGATAACTTTCTGCTGTTACTATCTAGCATAAGAGGGTGGGCAGGGTTGGAGAGAGGACAGGAATTTTTCCTCCTAGGACCAAACGCCTGGGATTCATAATCTTTCACCCTTTCTCCTCCAGCTATACCCTTTTTGTACTCTGTGTATATACTATATTGCAG
Seq C2 exon
TAGACAATCATTCCAAGGGTACAACAAGGTTTACCACAATGTGAGGGACTCAGCCATTGCAAATTGTACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACCCAGGGCAGCTA
R:
CTCATCTGTACAATTTGCAATGGCT
Band lengths:
196-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)