HsaINT0186476 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:44464339-44466959:+
Coord C1 exon
chr19:44464339-44464508
Coord A exon
chr19:44464509-44466876
Coord C2 exon
chr19:44466877-44466959
Length
2368 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCTTTCCTGGCACTTTCCAGGCA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGATTTCTGGAAGCTTGAACTTAAGAGTGATAACTTAGGGTACCTGGCAAAAGAAATTTCTGAGCAGCAAAGCATTCAAGAAGTGGCCTGGCTGCCTCACTGCTTCAAACAGCCTACAATTATATATGGGAGCAAAAAAATGACTTAAAGTTGGAATTTATATTTAAAAG
Seq A exon
GTAAGCAGAGTATAAAAGTTTGGAAAATTTGCAGCCTGGCCATTTAGTAGAGAAAGAAAAAGCATTTTTAGGAGAGGAATACATGTCGGCTGTGGAGCAACCACTCGCAAAAGAGATTTGCATGACTAACAGAAAGCCAAGTGGTAATATCTGAGACAATGGGAAAAAGACCTGGAAGACATTTCAGAAGTCTTCAGGAAAGTCCCTCCCATCACAGGCCTAGGGGCCTAGGAGAAAAGAATGGTTCCAAGGGCCAGGCCCAGGGACCCCCTGCCCTGAGCAGCCTCAAGACATTGTGCCCTGAATCCGGCCACTCTGGCTCCAGCCTCAGCTTAGAGTGCCCCAGGCGCAGGCTGGGTTGCAGCTCCAGAGGGTTCAAGCCTTGATAGTTGTGGTAGTTTCCACATTGTGTTAAGGCTGCAGATGCTCAGAATGCAAGCATGAAGGAGGCTTGGCAGCTTCTACCTAGATTTCAAAGGATGTATGAGAAAGCCTGGGATCCCAGTCAGAAGCCTGCCACAGTGGGGGAGCCCCAACAGAGAACCTCTACCAGGGCAGTGCCAAGGAGAAATGTGAGGGCTCCCCACAGAGTCCCCACTAGGGCACTACCTAATGGATCTGTGGTAAGGGGACCACTGCCCTCTGAGAAGTGGTCCTGAGACCACTGCTCAGTCATATCACTTGGCTGCCCAAGGCCTTGGGAGTCTATCTCTTATACCAGGATGTGGGACATGGAGTCAAGGATTATGTTGGAGCTTTAAGAGCCCTGGCTGGAGTACAGTAGCACAATCCTAACTTGCTGCAGCCTTTAACTCCTAGACTCAAGCTATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCTCAAGCCACAGCACCTGCCTCTTCATATGCTCTTTACCCAAATTTTCCAATTATTTACATTTTGTATTTTGCTTTGTTAACACCCATCAGCCAAATACCACTGGGAACAAACTTATAATGAGAAACAACTTATTGTAGCTTTCTGCATCAAGGAACCCCACATAGCAAGGTGATCATGGAGTGTCTTGGTAAGAGGCATTTAGGAAGGGCTGGCTATAGAGTTTCATATAAGATGCTAGGTAGTATTAGATATAATATTAAGTAATATCACTATTAAATACTAGATATCAATTAAAAGACTATTAATATTAGTTAATTCTGTTACCTATTAGATATGGCTAGACACCATCATCTTTTCTATCCAAACTCCCATATTTAAATTTGTTGTGCTTTTTAAAGTTCTTGTAACTGTTTTCCCCCATCCCCCAGTCCAAAGTCCAATTTTATGTACTGCTTTTAGGTGTCACATTTCTGTAGTCTTCTTTAATCTAGAAAGATTCAACAGGCTTTGTCTTTTTATTCTTGACATCCTTGAAGTATATAGGCAAAGTATTTTATAGAAAGATAGTCATTTGGGATTTATGTATTTCATGTTTAGGTTCAGATTATGCATTGTTGGTGTGGATACCACAGAAGTGTTGAAGTGTCATAACAGGGGCCAAATGATGTCTGTTTTTCCCTTCATTGGAGATCTCAACTTTGTTCACTTGGCCAAGATGATATCTTTCAGATTTTTCCACTGAAAGGTTACTTTTTAATTAAATTTTGAAAATAAAAACGTTTCTTACGGGAGATACATTATTAGTGGGCATTATCCTGTAAAGATTAGCTTCCACTTCTCCCTGATTTATTAATCAGTTTCTTCAACTATAAATATTCTATCAATATGGACCCACAATCCAGTTAAATAACATGTAGATTAACTGTTATTATTTCCAACTTTATTGAGGTGTATTTTACATGTCATAGAATTTACCCATTTCAGTCGTACGATTTAATAATCTTCAGGAACTTTGAACAGTGGTGTGACCGTCATCATAATTCAGTTTAGATCATTTTCGCCCCCCAATTGGACTCCTTGTGCTTATGTACAGTTAAACCTCATTCTCACCTCAAATCTGGAGCAACCACTAACCTACTTTCTCTATATATACATTTGCTTATTCTGGATATTTTATAAAATTGAATTTTACAATCCATGGGGTTTTTAGACTGGCTTCTTTAACTTAGCATAATGTTTCCAAGGTTCATACATGTTGTAGCATGAGCCAGTTCTTCACTCCTTTGAATTTCCAAATAAAATTCTGTTGTATGGATATGCCATGATTTGTCTATTCATTTACCCGTAGGAGGGCATTTTGCTTGTTTGCAGTTTGGGGTTATGAGTAATGCTGCTATGAACATTCATGTGCTAATTGAAAATACTTGTCTATGTTGGTGGTCGGCATTCCTAGTTACCATTTCCTGTCTGTTTTTCTGCCTTTCCTGGCACTTTCCAG
Seq C2 exon
GCATGATTTCACCTTCACTTGAACTGCTTCATTCAGGACTCTGCAAATTCCCTGAAGTAGAAGGAAAAATGACCACATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF221:NM_013359:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)