HsaINT0186490 @ hg19
Intron Retention
Gene
ENSG00000186019 | ZNF224
Description
zinc finger protein 224 [Source:HGNC Symbol;Acc:13017]
Coordinates
chr19:44598482-44600584:+
Coord C1 exon
chr19:44598482-44598641
Coord A exon
chr19:44598642-44600495
Coord C2 exon
chr19:44600496-44600584
Length
1854 bp
Sequences
Splice sites
5' ss Seq
CTGGTGATC
5' ss Score
0.38
3' ss Seq
GTTTTGTTGATGACCATCAGCTG
3' ss Score
1.79
Exon sequences
Seq C1 exon
GAATTCTGGGAAGTGGAGTCCAAACATTCGGTGGAGTCGCGGACACTTCCGCTCGGGGACTGAGGTTGCTGCAGTTTTTCCGCGATAGTTTGGGGCAGTTCCGCGCGTTGCAGGCCCTTCTGAATTTCCTGGACCTACGCATTGGATCCTCAAAGAACTG
Seq A exon
GTGATCGAATTAGGGGAAAAGGGGCCTCGTCGGAGAGTAGAGGTTTGGAGGGGCAAGGGCCGCTGTTTGCGTTCTCGTCCGTGGCACCTTCTTGGGCTTGGGTCTGTCCTCGCTTCCCGGGGGCATTGGTACTTGGTTGGGTCGCGTCTCACCTGGTTTCAGGGTTTCCGGGGCTCTGAGCTCGCCCACTCCGCCCCCTGCACCCCACGCGCGTGGCCACTTCTTCTCGATATAACGTTGGGGTGTTAATCTCCTTGGGTTTCCCGTTACTGTTCTTTAAAATGGGGACTTTAGGGCCATCCTAATGGAATCGTTTTGGGAACTGGAAGAGGTAACACAAATGAGAGCCTTAAAGCAGTCCCTGTCACTTGGTGACTGGTGGTCTCTTGTTAATTTCCCACGAAGGACCGGGTGGGGTCAGAGCTCCAGCTGCAGGGGCCTCGGCCCTTCTCCCTGATCCCTGCAGGACGCTGGATGATCCCGGAAGCCTTCTGACCTCTTTTTAGGAGAGCGAGGGTTGCGTCCACTTTCATGAAGGGAAAGGAGCATTTAACTTTTATGGGGGACGGCGACGCGGTCAAGGTGTTTCACAGCTTTCTCGTTCCCCAACCCGACCTTTCCAGAAGAGCTGCAGGGAGGGACTTCTTGGCTTCTGAGGGCAAAGCTCTACGTGAGTGGTCCTTGGCTCTTTGACCGAGATGCTCACCCCAACCGAGAGTGTATAGGTTGTGTCCTCGGGCATGGGGGTCGATAATAATTAAGTCTTAATTAGTAACTTCATTCTAAGGGCTTTATACAAATAAATTTACGCCACACCGTGGCTCTGTGGAGAAGTATTGCTTTTTTCTATTTTAAAAACGAAAGTGAGACACAGAGCGCATAGGCACCCGACTAGTGAGAGGTGGAGCTGGGGTTGGAACCTAAGCAGTCTGGGTCAGAGCCTGATTTGATCTTCTCTTGGGATACGTTGTCACTGAGGCAGAGGAACTAGTTGGACTTAGGTGGGGAAAGCAAGACTTAGGGGCTTGAAATTTTCTGAGTTTCTAAAAATGTTGTCAACTATTTTGTTTCAATCATTACAAATATTTTGTATTCTTATAGAACCATGTCATTGTACAGCATTCTATTTTTCTTTATTAAGAACAAAATGGGCCTGGCGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGTCCAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCGCATCTCTACTAAAAAATAATTACAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAATCCCATCTACTCGGGAGGGTGAGGCAGGAGAATCGTTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCGGAGATCTGCCATTGCACTCCAGTCTGGGCGACAGTGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAACAAAATGTTTTTATTACCTACGAATCCATGAAGTAAAGGTAGCAACTGTTAAGCTCGTAATGTGTTTCTTTCTTTTTGTATATTTATAGGTTTATTTATGAACATTTACAAATTTTTATAATTTTTTTCTTAATATTTCCCCCTTATGTGTTTAACTATGGAAATTTCCAAATGCTGACAGACTAAACTAGTGAATTATCATGTTATATCATACTCATTAATCTCATTATTGTTATTATTTTTCCTATGACTGTTTCCTAAAATTATAAAACTTTTTATTTTCATGTCATTTGAAACCTATAGAAAAGTTGCAAAAGTAGCCTAAGAAATTCTTATTTACTCTTTACCCACGTTTGCCAAGTGTTTACATTTTTCCTGTTTGTTTTGTTGATGACCATCAG
Seq C2 exon
CTGAATACCACTAGAAACATACCTGTAACCAGAGACAGCTGATTATAGCTTTCTGCAGCAAGGAAGCCCACGTACCAGGGGCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186019-ZNF224:NM_013398:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAAGTGGAGTCCAAAC
R:
CAAGACAGCCCCTGGTACGT
Band lengths:
246-2100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)