HsaINT0186491 @ hg38
Intron Retention
Gene
ENSG00000267680 | ZNF224
Description
zinc finger protein 224 [Source:HGNC Symbol;Acc:HGNC:13017]
Coordinates
chr19:44096343-44097888:+
Coord C1 exon
chr19:44096343-44096431
Coord A exon
chr19:44096432-44097805
Coord C2 exon
chr19:44097806-44097888
Length
1374 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CCTTTCCTGGCACTTTGCAGGCA
3' ss Score
8.09
Exon sequences
Seq C1 exon
CTGAATACCACTAGAAACATACCTGTAACCAGAGACAGCTGATTATAGCTTTCTGCAGCAAGGAAGCCCACGTACCAGGGGCTGTCTTG
Seq A exon
GTAAGTAGAATTTAGGAAGACCTAGTATATGGTTTCACATAACATATTAGATAATTTCAGATTGTATACCAGATAATGTTATTTATTAAATATTAGATATCTATCCAAAGACTGCTAATAGTAGTTTATTGTATTATCTATTATACAGTGCTAGATAACATATTACCTAACTTCATGTTATGTACTCTGCAGTTCTATATTTAAATTTGTTCTATTTTTCACTTAAGGTTCTTACAAGTGTCCCCTACCCATCTGCCACCACCACCTGTGTTCACAGTCTAATTTTATGCATTGCCTTTAATTGTCACATTTCCATAATCTTTAATCTTGAGGATTCTACACCCTTTGTCTTTCTATGCTTGATATTTTTGAAGAGTATAGGCAAGTTATTTTGGAGAAAGGCATTCATTTGGAGTTGTGTCTGATGTAATTCATGTGCGGGTTCACATTATGCATTGTTGGTAGGGATACCACAGAAGTGGTGAATTGCGGGTTCAGATTATGCATTGTTGGTAGGGATACCACAGAAGTGCTGAAATGTCCTTTTCATTGCAACATAACAGGGTCCAAGTGATGTCAGTTTGTCTCTTCATTGGTGATCTCAACCTTGTCCACTTGGCCGAGACGCTGTCTTTCAGATTTCTCCACTATAAAGTTACTTAAAAAAAATTGAAAAGAATAAAGTTTCTTAGGAATAGATAACATTATTAGTGGGCATTCAGCTGTAAAATGACCTTCTCCATTTATTCTTTGTTCAACTACAAATATTCTATCAATATGGCCTTAGAATTGACTCTTAAGTTAGATAACGTGTACATTAACAATTATTTTTTCCAACCTATTGTATCATATAACTTACTTATATCAGGTGTACATCCAGTGATCATTAGACAGTTTGCTGAATGGAGTAACCATCACCACAATTCGGTGATCATTTCATGCTCATATTGATTTCCTCCTGCCTACTTATGGTTAGACTTCATTCTCACTCAGATCTGAAGCAATCACTAATCAGTTTTCTCTATGCATTTTCCTACCCAGACATTTTATAGAAATGGAATCCTGCAATATGTGGTCTTTTTTAACTGGCTTCTTTCATTTAGCAATAATGTTTCAAAGGTTCATGTATGTTGTAGCATGAGTCAGTACTTCATTTCTTTAAATTTCCAAGTAAGATTCCATTGTATGGATAGACCATGATTTGTCTATTCATTTACCCACAGGAGGGCATTTTGGTTGTGCCGTTTTGGGTTTTTATGATTAATGCTGCTGTGAACAGTCATGTGCCAATTCACAATACACATCCCTGTTGGTGGGTGGCATCCCTGGCCACCTTTTCATGTCTCTTTTTCTGCCTTTCCTGGCACTTTGCAG
Seq C2 exon
GCACAATTCTGCTTTCCCAGGAACTGCATCACTCAGGACTCTGCAAGTTTCCAGAAGTAAGAGGGAAAATGACCACGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267680:ENST00000336976:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains