HsaINT0186516 @ hg19
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71487945-71490024:-
Coord C1 exon
chr16:71489975-71490024
Coord A exon
chr16:71488122-71489974
Coord C2 exon
chr16:71487945-71488121
Length
1853 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
GCGCTCTGCCCCTCACTTAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGACTTCACGGATCCCCTGAAGCTCATCCATGGACTTCCATGGACTACAG
Seq A exon
GTTGGGAACAGTCCACAGTCACACCAGTTGTATCTTTGGAGGCTTACTATGCTCCAGGAGCCATACTAAGCCCTTTGTATGGTCGTTTGGTCCTGACAACCGCCTCTGTGATAAGTGCTGTGTTGTACTCTTTCCACCTAAAAAGAAAAGGCAAAAGGGGAGTAGAGTAACTTGCCCAGGATCACAGAGTTATTGTGTGATTCAGAACTGCTTAGCCATAAGACAGCTGTGGAACCAGTGATGTTAACTTGGTCAGATTTGTGATGTGTATGGAATAATTTGTAAGGAAGATTCAAAAGCACGGTGACCACTTCACAAAGAAGAATCCCACTGGTCCCGTGACATGGGCTTCATCAAGGAAAGCCATCATTAAAGAGGGATCCAATTCAAGTAATGCTTAAGATAGAAAAATCATGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGCGAGGCTGAGGTGGTTGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCCAGCCAACATGGTGAAACCCTGTCTCTGCTAAAAATAGAAAAATTAGCTGGGTTTTATGGTGCATGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAGCCCGGGAGGCAGAGGGTGCAGTGAGCCGAGGTCATGCCACTGCGCTTCAGCCTGGGTGACAGAGCGAGACTCCAACTCAAAGAAAAAAAAAAATCTTTCGGACATAGAGACTCAAAGGATTTGTGGTGATAAGGAAGGTGGGAAGTCAAGAACAATCCCCAGGTTTCTGGCTGAGGTTTCTTGTGAGGGTGATTCTGACCCCAGCTGAAGTGTAAGTTCAGAAGGAAGTGCCAACTTACCAGGGTGGTGGTGGCGGCACACAGTGAAGACATTATATTTTGTGCAGAGAAGTTACTTGTTGAAGGTCACACAAAGAAGGCTCACAGAAACACCTAAAGGTTGGACTAGAATTGCTGATGGGTGGAGGTCAGTAAATTCCAGGAAGACACATCCTAGCAGAGAGGAGTTGAGCAGCAGATCCCTGCCAGTGAGCCCCCATGGTTGTTAGAGCAGGCTGAGGTGGGCAGAGGGTAAGCCTCCCAGAGGCTGCAGCTGCCCAGGAGGGGTGGTTGGGCCTGGGAGTGACACGAAGCGTCCCTGAGTGGTGGAGCTTGTGCCAACCACATAGCTTAGTGATGCAAAGGGGAGAGTAGCCGGCCAGTGGGAAGGCCGGTCTCCCTGCTTTCCCAAATGTTCTTGGAGAAACAGTGAAGCTTTCGGAGAAGTTGGAAAGGATGAGACTTGAATGGGAGAGGGTAAGGAAAATTCTGGCTTTCCAGGAAGACCCTGCAGCCTGGGCAGCATGGAGCATCCTTGGCTGGAGGTGCTCAAGCAGAGGCTGCACAGCCCCTTGTTGGGGGGTCTGTGAAGGGAATCTGGTGGGGCTGGATGAGACAGAAGCCGTGGATGATCTTTGGGGGTGGCTTGAGCTGTGAGGATGAGGGCGATGGGTGGGCAGCAGAACAGGGCTGAGGTTAGGCGCAGGGGAGTGGTGTGGGACCTGCTGGTGGATCAGCCCCGAGTTTGCTGGGAGGGAGCAGCTTATCTAAAAGAGTGGAGTTGGCTTTAGAGAATTTGCTTATGGAAATTTTTTTCTTTCAGCCTGTCTTAATGTGACCTCTTATTTGTGTGAAAAATGGCATGAGGTTTCCCTGCTGTGGGAGAATGTGGATACTTTGTAGTTTACTTTCTCGATATTTTTTTTCTGAGATCTTCCCCTTGTTGTTAATACTAATTTTGTGCTCTCACAAGCACCCTCCCCAAGCCCTTATACTGCGCTCTGCCCCTCACTTAG
Seq C2 exon
GGCCTGAGCTATGGAATTGGCCCTAGGGCAGCAGGAACCTATTGTTTCAGAAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-ZNF23:NM_145911:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCACGGATCCCCTGAA
R:
AGGGAGGCCACATTCCCATAA
Band lengths:
225-2078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)