HsaINT0186532 @ hg19
Intron Retention
Gene
ENSG00000159905 | ZNF234
Description
zinc finger protein 221 [Source:HGNC Symbol;Acc:13014]
Coordinates
chr19:44648710-44653050:+
Coord C1 exon
chr19:44648710-44648800
Coord A exon
chr19:44648801-44652923
Coord C2 exon
chr19:44652924-44653050
Length
4123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
AGGTGTGTTTGATGTTATAGGAG
3' ss Score
6.47
Exon sequences
Seq C1 exon
TGTTCCAGGCACGATTCTGCCTTCTCTCAAATGGCATAACTCAGGACTCTGCAAATTCCCAGAAACAGGAGGAAAAATGACCACATTCAAG
Seq A exon
GTGAATAAGGCTTGCCACTCTTGCTGTTAAAATTCCATCTCACTATTCTCATGTTTCCTGAGGAAGACTCAAGAACAACGGGCATTTGAGAACCTGTTTATGCTAAGTGCATCCTTCTGCCTTTTGAGTTGACTTTGTTTTTAGATGTTGTTTATTTTATTATTTCAGTTGACCTTCTGTATCTGTGGGTTTCACATCTAGGGGTTTTGCGTCTTTGAATTTTGCATTTGTGGATTCAACCAACCACAGATTGAAACCTGAGTCTATGTAAAGCTGACCATACATATTTTCCTTTTGCGGTTGATTGAGTCTGTGGATGTGGAACCCATGGATGTGGAGGGCTGACTGTAGTACAAACACTATTTTAGATAAGGGACTTGAGCATCCACAAATTATGGTATCCTCAGGGGTCCTTGAACCAATTCCCCAAGCGTATTGAGCGACAACTGTATTTATTTTATGGAGTAGAAAAATTGGTGTGAATGAACAGTTCTCCTACTTTACTTCTCTGCTTACGTATTAGCTGTTTTTATTTTCTTATAGTCTTTTCCTAATGTGCATTCATAACTATATTGGTATTCATGATATATATCTCATTTTTGTTATTTTTTCCTTAAGTACTAAATAATGTTCATTTTTTGAGGTTATGCCATATACCCATTTAATTAATGTGCCTTTTTATTTTTGACTACTTCCCATTCATGGACATTTAGGTGATTTAAGAATTTTATTGTTTTACATAACACTGCAATGACAATTTTCCTACATAACCGTTTCCTCAAAAATCAATTCTGAAAACTTTCTGCTGATTTTTTTGTCACCACAACCTCTGCCTTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGAAGCTGGGATTACAGGCATGTGCCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGACTCCTCCATGTTAGTCAGGCTAGTCTCGAACTCCTAACCTCAGATGATCCACCTGCCTTGGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCCACAGTGACTGGCTGTAGATAGAATACTCTAACATGGCACAGCACAACAGGCTATAATGCTGCTTCACACAAATAATATTGTTGGAGTTTTCATATAGGAAGAGCTAGATTCTGTGTGCTTTGTGCCTCGATCATACTTTGTATGTATTTTATTTACTAGTGTCTTATTGCCTTTATAAAGTAACCAGTTTGACCAAAGTAGTAGGTAATAACCTTCATTTAAAATGTCCAGTGACACGGAAGATTTGCCAGTCACTTGTGTTCTGTTACTGTATTTATTCAGAACAGCAGAATGAGGAGGTTTGTGGTCTCTTCTTCCTCTTAAACAGGTGAAATATGAGAAACCTTCTCAGATTGGCATAGAAAGTCAGGGGTCAGAAACATTAGCCATTCCATTTAAGTGAAAGTGAGAGACAAAAGGAAACAAATATTTCTCAATGAATGACCCGTGGTGTGGGTGTCTGGAGTGCCCTGTTGGGTGATAACGTCCACAGGTAGTGGGGGACCTCTTGTGTTCCTAATGTGGTGGCACCTCAGATGCACTAAGATGCTCAGCACTCCAGGTGCACAAGGACAGTGATTAGCACAGTGGTTATATAAAGTCTTTAAATTACTCTACGGATATCCCCCTCAGATAGTGGTTTCTCGGGTATATACCCAGTAATGAGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGTCTTCCACAGTGGTTAAACTAGTTTACAGCCATCATTCTACTGTCAATTCTACTAATAAGTGGTTCATTCAACCTCTGCACCCTCATTACAACACAAGAACATCTCTGAGGAGTACCCTGAAGCATGGGGATCAGGGGGTGAGGTTTTTGGTAAGTGTTTTAGTGGGTGTGACAAAAGATACCTTACAGAGTATTAAGAGAAAAACAAGTTGGGGCAAAAATATTTACCACACAGGTGCCAAAAAAGATGAAATTCATAATAAACATTGGTATTCATTTATAATCAAGTAAGTAAGAATAATAGAATTGTTCTTCCTAATTAGATTATCAAAACCATTGGAAAATTTATAACCTGCTTTTGGTCATCATATAGAGAAGCAAGGTGCTTGCATTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTACGATCACGGCTCACTGCAACCTATGCCTCCCGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCAAGTGCTTGTATTCTCTTGAAAGATTAGGGAGGCAGGAAAAAAGGAAGAAAATCTGCCATTATGTGGTCATAATTTTTAATGTGCTTTTTTTCTGATGTTTTATTTTTTATTTGCAGTTATTTAGTTTAATTTATTTTTTTGGGACGGGGTCTCACTCTGTAACCCAGACTAGAGTACAGTGGTGTGATCATCGCTCACCACAACCTTGATTACCTGGGCTCAAGCAATTCTCTCGCCTCAGCCTCCTGAGTACCTGGGACCACAGGCACACGCCACCACATGCAGCTAATTTTTTGTACTTTTTGTAGAGACAGGGTCTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATCCTCCATCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCGACTGTGCATGGCCTGCAATCATTTTAAATACACACGAAGGTAAGATCTGACAGTCGGGTGACTCATGCCTGTAATCCCAGAACTTTGGGAGGCCAAGGCAGGCGGATCACCTGAGATCAGGAGTTCGTGACCAGCCTGACCAACATGGTGAAATCCCATCTTTACTAAAAATACAAAATTAGCTGAGCATGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAATTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAGCTCTGTCTCAAAAAAAAGAAAAAAAAAAGGAAAGAAAGTAAGATCTACATGAAATGATGTTCTTTGCTGGATTGGTTATAATGAAAACAATATTGAAAATTAAATATTCATTAATTAGAACAGGTAGATGCAGATTTCAGTTCCCTCGAATAATATACAGTCATGAAATGAGGTGAAATAGATGATGATGGTAATAATAATAGATAATAGCTAATGTTTCTTAGGTACTTAGTCTGCGCCATACACTATTCCAAATGCTATATGTAGTTTCTTTTTCAACGTTTGAAAGAACTCTGTCATGTAAGAACTATCATACCAAGATGAAACTAGGTGAACTTATCCAAGATCACACAACTTTGAAGGGTACCCTTGTGTGCACTGAGGCATGATGGCTCCAGATCATGACACTAAATGCTGCAGGTAATGCTGGTGCTGTGTGCCCTGGGTGTACAGAAGGAAAACTACATAGCAGTTTTAGATATGTTACCAAAAGCTTGTTAGTTTGGCAGACTTTAATGAAAAGGGATAGCATCCAGCGTTCCTATGTGAGAGAGGAGGAAGGTGGGTGTTATCATGTATGTTGGTTCTGACTTGCTAAATGTTTCTGGGGCAATTGGTAATATTTACCGAAAGGTGAAACCCGTGTGGCTCAGGATGCGTCATTTAGAGTTCTAGATGGTTACTTACAAATAGACTCAGTGAAGCCACAAAGGAATTGAAGGCTATTGTTACTGATGTACTTTTACTGACACTAAGGAAAATCAAAGTGTGGCATTGGTAAGATGGAAGGAGAAGGGCTGAGAAATCTACACATTAAGTCTCTGAAAATCTGGACCAGCTCCCCCTACATACTCTCCACTTTCTCAGTGCTGTTTCTTTTCAAGAGTTTGTTAAAAAGGCTGAAGTAAGGTGTGTTTGATGTTATAG
Seq C2 exon
GAGGGACTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAATCTGTACCAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159905-ZNF234:NM_001144824:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)