HsaINT0186538 @ hg38
Intron Retention
Gene
ENSG00000159917 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:HGNC:12866]
Coordinates
chr19:44298808-44299732:-
Coord C1 exon
chr19:44299606-44299732
Coord A exon
chr19:44298904-44299605
Coord C2 exon
chr19:44298808-44298903
Length
702 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TAAATACTATCTTTTTATAGGAC
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAGGCAGTGACATTCAAGGATGTGGCTGTGGCCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG
Seq A exon
GTAAGGACAGGCACCCTCTGTAATTCAGCAGGGTTTCTCAACCTCCATGCCATTGATGTTTTGGGCCAGATAATTCTGTGTTGTATCAGGCTATCCTGTGTATTTTGGGATGTTTAGTGGCATCCCTGGCCTCTGTCCCCTTGTTCAAGGCTTTGGGACTGCTCAGAGACTAGAGTTTTTCTATCTCTTTAGAGCATAGAGACAAGATGTTTCTGACCTTTGTTCCAAGACAGATGATTTTCTTTTAGACATGAACTATAAAAGAACAGTTGAGCTTGGCTCCTCCTGATTCCTTATTTCGTATATCTTTTTTAAACTTGTGGGTCATGATCCATTGGTGGGTCAGTAAATTAGTAAGTTACATAAGCATTTTTGTAATAAAATAGAGTAACAATATCAGAGCCCCTTAGCCAGAATGGTGCACATTGTGGCAATAACTGCTGCTGCTTGCCGTAAGGGATGTGATGAAAACAGATATTGATTAGAAATAGGTCCTTTAACCTTTTATTTCAATAGTTTACACAGGGTAATGTATTTCCAGTGATAGTAAATGTATTTCTTATAATGTGTCATGACAAAAAAAAATGTTCCCTAAACATTGCATGCTGGGGCAGGGAGGAGACTTACATCATGTGATTGGAACCAGATTTTTTCAGTACTCTTTGCCTTTAACATTTTCACTTAAATACTATCTTTTTATAG
Seq C2 exon
GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAGGTAAGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159917:ENST00000291182:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGTGACATTCAAGGATGT
R:
CTGAATGCTTACCTCTTTGGGT
Band lengths:
222-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains