HsaINT0186750 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56999280-56999504:-
Coord C1 exon
chr15:56999461-56999504
Coord A exon
chr15:56999349-56999460
Coord C2 exon
chr15:56999280-56999348
Length
112 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGACTGATATCATGTGTCAGTAC
3' ss Score
2.48
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
GTGAGTTTAGAGGTTAACCTTACATCCAATAATTTGTGAATCCCAAGTTTCATGTTTCAATATTTGGTGTTACTTAAAGTGACTCATTAAATTGACTGATATCATGTGTCAG
Seq C2 exon
TACTTAGGTGACAATTTACAGAAAGTCATCTCTGCAGCTTGATGGGCGACAACCCTTTTCAACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_017661:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACAGAAATAACTTGCTGGCT
R:
TGGTTGAAAAGGGTTGTCGCC
Band lengths:
106-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)