HsaINT0186802 @ hg19
Intron Retention
Gene
ENSG00000168661 | ZNF30
Description
zinc finger protein 30 [Source:HGNC Symbol;Acc:13090]
Coordinates
chr19:35417807-35420860:+
Coord C1 exon
chr19:35417807-35418186
Coord A exon
chr19:35418187-35420787
Coord C2 exon
chr19:35420788-35420860
Length
2601 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
CTCCTCTCTGGATTTTCTAGCTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
CTTGTGGACTGCGCCGGGCATGCTCGGCGGTGTGACGGCTCAGGACTGCATTTCCCAGAGGCTGCAGCTATCCGGCCAATGTAGCCTGAAACTACATTTCTCAGCGGCCACTGGAACGACCTCAATCTCTGCCTCCTCGCCAGTTCATTGTGGTCGTTGACCCGGCAGCGAGCTTTGGAGTTCATCGAGGGAGAAGTCAGCGCCCAGCTCCGAGGTTGGAGCAGCCCCGCCGGGCAACTTGAATTTCTGCAAACGAACACAGCACCGGGAGCTCTGCAGACCTGTGTCGGCGCGGAACCCGGACTGAGACATGCGTGAGCGTTGGGTGGACCGGGCGAGGATCCCGGGCCGGCGAGTGCGGGAGCGGCAGGGCAGGGAGG
Seq A exon
GTGCGTCGGCCGGGGCCGGTGTGCATCCGCGAAGACTGGGTGCATGGCCTCCATGCGAACCTGAGCTATTAATATTTGTTACTATTTTGGATAAAATCACTGTAATTGATTTATGTAAAGGAGCAAAAGACTCTTCAACTCTCAGTTTAAAAAGGAAACGATAGTTATGATACCTTTTGCATGCAGCGGGAAGAAATGGGATTGCCAGGAAGCCTCTTCTTGTTTGGAAAAAACTGTATAAAGTATTTACACCTTTTAAAGATGAGAGCAATGTCATCTGAAAATTATCAGTGCAGGGAAAAGGACTTCAAAGGATCTGTTGTGCAGATTACTTAACTAATGACAAAATTATGTAAGAAAGGAGAGCAAGATGACAGCTGTAAACATTTCCATCAATCTCCATATTGCACAGAAATAGGACCCAGCTTTTTCTTAAGGTTCTTCAATTTTGCATTATCCCACAGCAGTAGCTCTCTCTCTCTAGCTGCTAGGGGACAGAGGAAATTGAAATGTCAGAGAATCTTTTCTGTTGGTTTTTTATTTGTTTGTTTTTAAAGAAGAGTTGCTCTTAATTTTTTAGTTAGAATTAAAAGAAAGCATGCCAGAGAAACTTACGTTTTAAGTAAAAAGTGGAAACAGGTCGGGTGCCATGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCTGAGGCGGGTGGATTGCCTGAGCTCAGGAGTTCGAGACCACCAACATGGCAACATGGTGAAACCCCGTCTCTACTAAAAATATAAAAATTAGCCAGGCATGGTGGCGTGCGCTTGTAGTCACAGCTACTTGAGAGGCGGAGGTGGGAGAAGTGCTTGAAGCTGGGAGGCGGCGGAGGTTGCAGTGAGTGGAGATGGCACCACCGCAATCCAGCCTGGGCGACAGAGCGAGATCCCTTCTCTAAAAAAAAAAAAATATATATATATATATATATATATATATATATATAGATAGATAGATAGATAGATACATAAATTAAATTAAGTGGAAACAAGTGTTTAATTAAAATGAAATAAAGGATGTATAATGTTTACGTAATAACTCCAATGCAGTAGTGCCCCCTTAATCGGCAGTTTCACTTTCTTCACTTTGTTACCCTCAGTCAACCATGATCTGAAAATAGGTGATTTTGGTACAATAAGATATTTTGAGAGAGAGGGGCCATGTTCACATAACTTTTATTACAGTATGCTATTATAGTTGTTCTATTTTATTATTAGTTATTGCTATTACTCAATTATGGTGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGATACTGAGATGGGTGGATCAATTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTAGTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTCCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAACAAACAAACAAACAGAAAAATAAAAATCTCTTATGGTGCCTAATTTATAAATTAAACTTAATCATAGGTGTGTATGTATAAGAAAAAACATAGTATATATGGGGTTCCGTCAGACATCTACTGAGGATCTTAGAGTGTATCTCCCCCCTGTGGATAAGAGGGAGCTACCATAGTAAGAGCTAACTCGGCTGCGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAAGTCAGGAGATGGAGACCATCCTGGCCAACATGGTGAAATTCCGTCTCTACTAAAAATACAAAACTTAGCTGGGCGTGACTATGCGCCTGTAGTCCTAGCTACTCGGGAGGGAGGCAGAGGCAGGAGAATCACTTGAATCTGGGTGGCGTAGGTTGCCGTGAGCCAAGATGGCGCCACTGCACTCACTCCAGCCTGGGTGACAGGGCGAGACTCCGTCTCAAAAAATAAAACAAAACAAAACAAAACAAAAGAGCCAACTCATGTTAAGCAAGTATTCTATTAACTTTTGGGGTGGGTTTTCTTATTCTTCAGGACAACCACATGTTGGAGCTGATACTCCTATTACTATTTTAGTGATGAGAAAACTGAGCCATATTAGTAACTGCCTGATCATTTTCTCCTATGTTCTCTACCTCCCGTGTCTTGACCAACCTCAGATTTATACTGTCACCATTAAAGAAGCTCTGGATTGGGTGATATGGACTCTTTCTTAGGCTTAGAACGTGGGAATGGAGTGAGGAGAATCTGTTCAAGAGAAGACTGTGCAACCCAATTTGAGACCTAGATCAACATTCCCAAAATGGGGGCCTGGTGGGAAAGCTTGTGTCTGATTCTGCCTTCCTTAAGAAGTGCCACACCTCTGCGATCAACTCTGTACAGCTTAGTTAACTGGGGCTTGAATTCCACTGTTCTCCAAATTTTGTTTGAGGGTGTTTGTAGCACAGTTTGGAAGCTGAAATGAAGGGACAGGAAGGTTTATTAATGTATGTCATTGAGAACACTAAAGCCTCCTTTTCTCCTCTCTGGATTTTCTAG
Seq C2 exon
CTTTTGAACTTCTCAGATAGAGGAACCCCAGTGAAGACTGATCAGTTCTTACAATTCTCAAAGCATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168661-ZNF30:NM_001099438:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)