HsaINT0186811 @ hg19
Intron Retention
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]
Coordinates
chr5:150282703-150283539:-
Coord C1 exon
chr5:150283426-150283539
Coord A exon
chr5:150282745-150283425
Coord C2 exon
chr5:150282703-150282744
Length
681 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CACCAGTTTTGCTTTTTCAGTCA
3' ss Score
5.99
Exon sequences
Seq C1 exon
ATGTTTTGATACCCCCATATAAAATAATCTGTCTGTCATGGGAGCCCCCACGTCCTCTGAAATAGTTCAGCTCTGTCTGCATGACTTGTCCTGGGACTGAGGAAAATTTACCAG
Seq A exon
GTATTTACCTTCCTGCATTGTGGTATACTCTTTTTTTTTCCAGTGGTTCCAACCTATCACCATTTTTGTATACAGACAATAGAGCTGTTGAAAAAGAGCAATAAAAATTTAAACAGAAAACATCTTAAAATTAACCTTTGAGTTCATGCACATTGATTTAGCAAGAGTTTTCTAAGTTGGGGGAAAATATAAGAGAGTTCTTGGAAAATTGTTGGAATTCAGCTGCTGGTTCTTTTTAGGAATAGGGAACACATGCCTCAGTTTTCCATTTGGTCATTCCCATTCTTACTGCCAAGGAGCTCCATCTTCACTTATATCCTTATATAGCTATCCATGATTATTGCCTCATGAAAATCTTCTATAAATAGAATTGCTGATTCCCAAGGGGAACAGTAAGTTGTTAGTAAATCAACTGGAAACATATCTTCACATCTATCCAATTATAAAACCTTGGTCAACTTCTATGTGATCATATTATAGGTACAAGAGGAGTAAAGAATGATCCCTCCTCCACATGGTGCCTGCTGAGACTTCTGTAAGGCTCAAACAACCTTATCCCACAGGGTAGCCCATTAGTTACTTGACTTCTGATGTTAGTTGTTGCAAGATTGGTGAATGTGAAAGCTGCAGTCTGGGTTTGGACTATGAAAAACATTCTGATCACCAGTTTTGCTTTTTCAG
Seq C2 exon
TCATCTGGCCTTTTGGAAGAGCAAAAAATGATGAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908-ZNF300:NM_052860:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.206
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF100774=DUF2314=PU(1.2=20.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)