HsaINT0187041 @ hg38
Intron Retention
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38094347-38095633:+
Coord C1 exon
chr10:38094347-38094490
Coord A exon
chr10:38094491-38095537
Coord C2 exon
chr10:38095538-38095633
Length
1047 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCGTTACTCGCTCGTTCTAGATG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGCACTTTTCGGCCCCCGTCGCGGGAGCCGCTTCGGGCCTTCTGGGCATGTCTGCCATATGGCTCCAGGTTTGTTTTTCTCCCCGGCACTCTGACGGGGAGGGCTCCCGGCATCTCCTGGCGTCCGGGTAGAGGACGCGGAGG
Seq A exon
GTGAGTAAGGGAGGGCAGGGGCGAGGGTGGACTGGGGGTTCCGCGCGGCCTGGGGGTGGGAGAGAGGGAACGCCTTTGCCGCCTGGCCTGGGTCCGAATCCTGCCTCGGTTCTTGTGCTCCCAAAGGGAATGCGCAAGTCCCGCGCCTGTGACAAGTGAGGTTGGATTTTCTCTTCCCTGAGGTGAAGGATGCCCGGAGGCCTCCGCAGGACGGCGCAGAAACGGGCCTTCTGCCCAATAGATGCGCGCTTCTCTCATTCTTTCCCCTCAGAATCTCGCTGTCCTCACAACCACCTGTGGTCGGCGTCGCCGCGGTGTCACTGCGATGCCGAGGCGAATGGGGTGGGGGGAAGCGCCCGCGGGGCGGGGAGGGACCCTGCAGGCGCGGACTCCACACCCAGCCTCTGGCCAGCGTCACTCGGCTTGCTGTGTCCTCGCAGGTCGCAGCTTCATTGCCTGATGTCTTCGGGAAGTATTTTGAAGTCATCGTGGCTGTGGATTGGGGAATTTCTTGTTTCCACTGACCTGTGAGGCCGCGCACGCGGAGGGAGGCACCCCAGGCCCTCCGGCACTGTCCAGCCTCGCCTGTGTCCCCATTAGCACCAGTGGGCATTTTCAGAGGGTCCAGCTCATGGCTCAAGTGACAGGAAGATGTAGGAGCTTTCTGTCTTGAATGAGGATTCGAACCAAAGGGCTTAGGCCCAGCTGTCTTGGAGCAAAGCAGCTGTTGTGGGGTAAGAAGGGAAGGGTGGGGGGCGAGGGCCCAGGGGCCCTCCTAGGAGGACACCCAACCCGTTGGGCTGACACCTCACTAGAGATCTAGAGCACGGGTGGGAGGAGCAGAGGCTCGATTTGTGTCCTTTCCAGACCCCCACAGGCTGGGAGCTTTGTGCCCATTCAGATGTGGGGGCAGAAGAGGGCAAGGCCGAAGGAGCAGACAGCACCGCTTCTTGGGGAGTTGTGAAGGCATCATGCGGAGGGAAGAGCTTAGCAGCCAAGTGGAGGACAGCACCCTCCATGCCTGGATTCGTTACTCGCTCGTTCTAG
Seq C2 exon
ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407:ENST00000361085:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACTTTTCGGCCCCC
R:
GACCTTTCTCGCGGCTGTAC
Band lengths:
239-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains