HsaINT0187121 @ hg38
Intron Retention
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr7:149126416-149128944:+
Coord C1 exon
chr7:149126416-149126655
Coord A exon
chr7:149126656-149128822
Coord C2 exon
chr7:149128823-149128944
Length
2167 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
GTTTGTTGGGTTTTTTCCAGACG
3' ss Score
7.13
Exon sequences
Seq C1 exon
TCGGTCCTCAGAGGAGGGGCCCGGGCACCCTCCGTGCGGGCCGCAGCACGCCGGTCTTTGAGGGACCCTTGGACTCCCGGATCTGCATGCGAGGGATGCGGTCGAAGACGAGATGAGGGAGCTGACGGGAGGGGAAACGGAGGGGCAGGTGAACATGGAGAGAGCAGGAACAGGGAGAGAGTAGGGACAGCGACTGGGAGACGCGCTCCACAGAAACCCGGACTGAGAGGCAGCGAGAGG
Seq A exon
GTGAGAGTCCGGTGCTGTTCCTTCCAAAGCTGCCCCCAAGTCAGGGATGAGCTCGAGGGTTTCGTTTGTGAGGGGGTCCCGGGAATCCAGCGAGGCCGGGTAGGTGGTGGGGGGCGCGCGGTGGCCCGGGGTGTCCGTCCCGCCGGGGGCGCGGAGGCCGTGTGGGCCCCGGGCATGTCCCGTCGGGGACGCGGAGGAGGGGTCCGCCCACCACGTCCGGTCCCCGTGGGTGCAGCGCCCTTCTGGGCTCCCCGAGCGTCCACACTCCCTCCTTGGCAGAGAAAGGCCTCGGGCAGAGACCCCATGCGGAAGCCACCCCGGCCTCGGGGCCGCCTGCGGGGACTCAGGGTCGCCCAGGGATGCGGGCCGGGCACCCCTAGCCCCCGGCGGGAGACTGTGACAGAGCGGGAGAAGACGGAGGAGGCCATGACACAGGGCGTGAGAAACACGAAGACGCAAAAACGGGAGAGGTGGGAAGACGCAGAAGGGGAAACCAGGGAGAGACAGAAAGGAGAGAGAGGGCAAGGAAGGGGGTGGCGACTGTCCCCAGAAAATCAACCTCGCATTCTGTCCTAGTCATGTTTTAGGTGTCAGGCTAAAGTAACAAATGAAAAGTGTGTAGTTAGAAAGGATGTCCATGAGAAAGTAGTCCCTGCATAGGCTGAGGAGCGTGTGCACATCTGTATTTGTCCCGGAATCGTGAAATGTAGATGCACCTTACTGATTAAAGGGTTAAAAAAAAAAAACCTTACATTAAAACTAACGTTTCGGATGGGCGCGGTGCCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGCGGATCACGAGGTCAGGAGAGCGAGACCATCCTGGCTAACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAAATAGCCGAGCGTTGTGGCGGGCGCCTGTAGTCCCAGCTCCTAGGGAGGCTGAGTCGGGAGAGTGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCATCTCAAAAAAACCAAAAACAAACAAACAAAAAAACTAACGTTTCTTTGGGTGTAAAGTTCTATGAATTTTCACATATGTATGTATACGTGTAGTAACCACTGTAACCAGGATACGGAAGAGCCCTGTCCCACCCTGAAACTCCTTGTGCTGCCATTCTCTTCTGTGCTTCATTTGCTTTATGGTCACTCCCTCCGACACCTGGATCCTTGGCAAGGACTGATCTGCTCTTGAAACCTAGTTTTCTCTTTTTAGAAATGGTATATAAATGGAATCATACAGTATGATATAACCTTTTGTGACTGGCTCCTCAAAAGCGTAATGCTTTTGTGATTCATCCATGTTTACGAAGAGTCAAACTGTAAAATATTTAGAAGTTTATTCTGAGCCAAATATGAGTGAGGAAGGCCAAGGTACTGTCTGAAGAGGTCCTAAGAACATGTATCCAAGGTGGTTGGGTTACAGCTTGATTTTACACGTTTTGGGAAGACTTAAGACATCAGTCAATACATGTAAAGTGTACACTGGTTCTGTCAGGAAAGGCGGGACAACTCCAAGCGGTGCTTACAGGTCACAGGCGGATTCAGCGATTTTCTGATTGGCAATTGGCTATCTGAAGACCAGGTTCATAGAAAGGAGTGTCTGGGTTAAGATAAGGGGTTGTGGAGACCAAGATTCTTAGGATGTCTCATAGTGACTGTCTTTAGATGGCAAAAATTTCCTATTTAAACCTTTAAAAGGTGCTAGATTCTCTGGCCGGGCGCAGTAGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGTAGGATTGCCTGAGCACAGGAGTTGAAGACCAGCCTGGGCAACATGGCGAAACCCCATCTCTACAGAAAATACAAGATTTTGTCAGCACAGTGGCAAAGACGTTAATCTCAGCTATTTGGGAGGCAGAGGTGGGAGGATTACTTGAGCCTGGGAGGCGAAGGTTGCAGTGAGCACAGATTGTGCTGACACTACAGCCTGGGTGAGAGAGGAAGACAGAGGGAGACTCTGTCTCAAAAAAATAAAATAAAATAAAATAAAATTATATATATATATATATTGTTTGTTTGTTGGGTTTTTTCCAG
Seq C2 exon
ACGTAGTCTTGCTCTGTTGCCTAGGCTGGAGTAGAGTGGTGTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024:ENST00000426851:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains