HsaINT0187223 @ hg19
Intron Retention
Gene
ENSG00000197619 | ZNF432
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:24740]
Coordinates
chr19:52550107-52552073:-
Coord C1 exon
chr19:52551948-52552073
Coord A exon
chr19:52550314-52551947
Coord C2 exon
chr19:52550107-52550313
Length
1634 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AAAGTTGTTTTGCTCTTCAGTCC
3' ss Score
5.65
Exon sequences
Seq C1 exon
AAACGCGGCTGACCGTCTCTGGAGGTTTAGAGGGGGAGGGAGTTGGGCGAGGGGCCCAGAAGTGGAAGAAGTTTAGGGAAGTAAGTTCAGCTTTTAAGAGGTCGCGGCGATTCCAAGGAGAGTCAG
Seq A exon
GTCAGTGTGTGGGTCAGGGCGTGGAAACGTGGTGGGAGGGAGCTTTCTGAGGGCGTCTGCGTTGTTGGTGGCGCTATATGGTGGAGGTAGCGCGGGGGTTGGGGGAGGCGGGGGCGGGTGTTTCCTTTTGGAGGGGAGCTGGTAGGAGTCCCTGGTGGGTGTCTGTGATAGGATATCTTTGGGGTCCCTCATGGAGGCTCTGGTGGTCAGTGATTAAAGGCCTGAATAGATCAACGACCAAGAGTACTGAGGTCAGGGATTGTGGTCCTCGCGGGTCACTCCCCAGTGGGGCTCAGTGATTGAGAATCGATGGGGTGGCTTTTGTCAACGAATGTGACTTCTGTTTCACATTCTGGATTAATCTGAGGCTTAGTGATTGATGAATCATTAAGGGAATCCAGTGTACGTGTGTGTCTATTCCAGGTTTTCCTATTTTATCTGGCGGGGTGGTGGTCTTTTGTCTAGAGACAAGTGAAAGCCGAAGTCTTTTCACAAGAGCCCTGGCTGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGCTCAAACTTTGGCTGGAACAGACTTGATGAACGTTAACATTTCCTAAAAGTTTCAGGTCCGAGTACCTCCTCCACAATGAGTTTTCTAATCCTCTGGCTTTCCACAACAACCCATGCTCTTGAACCTGCAGAAAATGAAAGTTTTTTGGGGGTGAAGGGGGGCGGATGAATAGGCTTTCTATTTAACATTATGTTTTTAAATTACTGCGCACAAATTAACAAGAGCCTATTTTTATCCTTCCTCTTGCAAATGTACTGCATATTTTTATGGGTGTTTCAGGTTTTGTATGTTAGTATATAAAGGCGGCTATTTTCCCAGTATTTATATTTTTGAATTGTTTTCTAAATTTGTATTTATAACTCGTATTCCTTTTCTCTGTCTCCCTCTTTTTTTCTATGTGTTTCTTGTTCTTCATATTGAAGTGTGTATATAAACATTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTTTTGTCGCCCAGGCTTGAGTGCAATGGCTGGGCTCACTGCAAACTTCGCCTCCTGCGTTCAAGCCATTCTCCTGCCTCAGTCTCCGAGTAGCTGGGATTACAGGTGCCTGCCACCATGCCTGGCTAATTTTTTCTATTTTTAGTAGAGACAGTGTTTCACCATGTTGACAAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCATCATGCCTGGCCGTATATAAACACTTTTAAATATATATAAAGACTTTTAAAGAGGTGTGAGAGTAACATTGTATAAAGGAAAAAATGTAGTTTCTCACCATCCATATGGCCTGATTTAAAAAACTGATATGAGAATTACCTACTGCTTAGGCATGATGCTATGTGGATTCTCCTTTGTGACCTCCCCTTTCATCTTCATGTTACTTCCACACTTCACCGAAGAAAGGCATTTGGCCTACATTGAGGGTCTTGTGTTTCCTTGGTTTGAGAGAACCAAATAAAGAGACAAATATTCAGGGCCACGTGTTAAGGTGAATGTACCCCTGAAAGTTGTTTTGCTCTTCAG
Seq C2 exon
TCCACAGGTCCTGGCTACCCTGGGAAGAGACAAGAAGTAAATGAAGAAAGAGGAAGATTCCAGGACCTAGATATGATTTCTGTGGACACCCTTCACTGGTGACTGAAGTTTCTAAATAGAAATTTAAGGCAGATCCAGAGGAGACAAAGACAGAGTATCCCAGGTGCTGGCCATTTCCCACAACAGAAGAAAATGATCAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-ZNF432:NM_014650:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACCGTCTCTGGAGGTTT
R:
CTGGGCATTGATCATTTTCTTCTGT
Band lengths:
326-1960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)