HsaINT0187323 @ hg19
Intron Retention
Gene
ENSG00000197808 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:21629]
Coordinates
chr19:37155600-37157739:-
Coord C1 exon
chr19:37157592-37157739
Coord A exon
chr19:37155689-37157591
Coord C2 exon
chr19:37155600-37155688
Length
1903 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTAACTCCCCTCTCTCCCAGCAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
ACTTCCGGTAGGAGCCTCGCAGGAATGGTCTCCGGGTAGAGGCAGGTAAGGATGTCCCGGGCCGGTGGAGAAGGAAGAGCTGGGCGTGTGGCTTCGCTTGGAATCCGAATCAGAGCTTGGACCAGAGCCTTCCCTGAGAATGCTGAAG
Seq A exon
GTAAGAAATCCTGGCTCACCAGTGCCGCGGAAGGGAATGTCTATAGTTTTAGGCCTCTGAGTGCGGGATCAGCCCTTAGGTGGGTGTGTTTTGAATGCGTGAGGAAGTAGGGTTTCTCTTTGGGCTGTGTGTTACTGTTGGGACAGCGACCTGGTGCGTGGGTGTGCTTTAGTGACAGTGTGATTGTGTGCCTGATCATTTGTGTAAATGGGGTTTGTAGGTGACTGTGACCATGATTGTGAATGGCTATTTGTGTAAATCTCATTTATTTACGTGAAAGAAAAAGCACATTTACAGGCCGGGAGCGGTGGCTCACCCCTGTAATCCCAGCATTTTGGGAGCCCGAAGCGGGTGGATGCCCTGATGTCGGGAGTTCGATACCAGCCTGGCCAACGTGGAGAAACCCCACCTCTACTAAAAATACAAAATTAGCCGGGTATGGTGGTGCATGTCTGTAATTCCAGCTCCTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCTGTGAGCCGAGATCGCGCCATTGCACTCCAACCTGGGCAACAAGAGTGAAACGAAACTGTCTCAAAAAAAAAAAAACAAAAAAACATTCACGTTATCCTCAGGCTCACACGATCAGGCAGAGAGCTTCCACTCCTCTCAGTCAACTCTGGTCTCTCACACACAGACACACGCACATTCACCTCACCCCGCTCCTGTGCACACATCTAAGGCTCAGGACGCCCCACTCCAGAGATCTGTCATTCATCCATCTCTCATCCTTTCCTGACTACTTGAGGAGTTAGCTGTAGATTTACACACACAACACAAGCGAAAATCACATTGCTACCCCGCATTTATCATTACAGCCTCAGAAAAACACCACATATGTAGTATGCTTATGTACCTATGTGTTTGATTTTTTTTTTCTGAGATTTGGCCACAATACACATTGTTCTGCAACTTCCTTTTTTTTTTTTTTTTTTTGAGACGAAGTTTCTCTCTTTCACCGTGGCTGGAGTGCGGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTTCGGGTTTTAAGCAGTTCTCCTGCCTCAGCCTCACGAGTAGCTGGGATTACAGGCATCCGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGATTTCACCATGTTGGCCAGGCTGGTCTTGAGCCCCTGACCTCGTGATCCGCCCGCATCTGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCTGCAACTTCTTACTAAAAGATATTTATGTCCTTTTGTCTGTATTCAAAGACAAACTTAAGAATATTTTTCAGGATGTTTCCAGGTATGATTCTTCTTTAATTCTTACAGCACTGTACTTCAAACTAAAGACTCAAGAATTTATTTTGGTCTGCAAATTTTTGTTCTATTTATTTTTTCTCTTCCATCTGTGTTGTTTCAGCCTCTATTTTTGAAATTTCTGTTACACATACACTGGGTCTTTTGGGTCTGTTTTCTGTTTCCCTAATCTTTTCTCATAATGTTCATTACCTTTTCTTTTTCCTCTTAATTCAGTGAAAATCTACCCAGTGCAGTTCTCAGCACCCTGATCCTGGCTTCGATTTCATCATAGTATTGGGACAATGGGCTGGCCTAACTATCCCTTCTGCTGAAGGGCATGATCCTTGCTTTTCTTGAGTCTATCCTGCTGTAGCTGAGTTTCCTCATGGTTTTGAGTAAAGCTAGGATTTGTCCAAATTCCCACTAATAATTTATGTATGTATGTATCAGGTCTGGGAATAGGAGATATGAAGGGGGAAGAAAAATGTCATTCTGAATTAACATTTTGGGAGCTTAGAGGCAATAATCTCCTGTCTTTTTTTTAACTCCCCTCTCTCCCAG
Seq C2 exon
CAACACCTTCTTTGGATTGAGTTTCTTCCAGAGGGAACGAAGAAGAGGATTAAATAATACATTCAATTCTAAAATAAGACATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197808-ZNF461:NM_153257:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGAGCCTCGCAGGAAT
R:
TGGGCCATGTCTTATTTTAGAATTGA
Band lengths:
230-2133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)